ProjectDebbie
DEBBIE is an EU funded, MSCA-IF project to automatically curate biocompatibility data from the biomedical literature into an open-access database
EU Horizon 2020Barcelona
Pinned Repositories
background_set
PMIDs of non-relevant articles to use for filtration
Biomaterials_annotated_corpus
Gold standard of biomaterials and biocompatibility literature annotated by the Biomaterials Annotator
Biomaterials_annotator
A lexical instrument to annotate biomaterials text
Classifier
SVM classifier pre-trained on biomaterials abstracts
DEBBIE_pipeline
A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection
gold_standard_set
PMIDs of the gold standard set for 'biocompatibility'
Ontology_DEB
The Device, Experimental scaffolds and medical Device ontology (DEB)
OWL2DICT
A tool for converting owl ontologies to a dictionary object with user-selected classes
ProjectDebbie.github.io
Project DEBBIE pages
pubmed_retrieval
python code to rertieve abstracts from pubmed
ProjectDebbie's Repositories
ProjectDebbie/DEBBIE_pipeline
A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection
ProjectDebbie/Ontology_DEB
The Device, Experimental scaffolds and medical Device ontology (DEB)
ProjectDebbie/OWL2DICT
A tool for converting owl ontologies to a dictionary object with user-selected classes
ProjectDebbie/Biomaterials_annotator
A lexical instrument to annotate biomaterials text
ProjectDebbie/gold_standard_set
PMIDs of the gold standard set for 'biocompatibility'
ProjectDebbie/ProjectDebbie.github.io
Project DEBBIE pages
ProjectDebbie/pubmed_retrieval
python code to rertieve abstracts from pubmed
ProjectDebbie/background_set
PMIDs of non-relevant articles to use for filtration
ProjectDebbie/Biomaterials_annotated_corpus
Gold standard of biomaterials and biocompatibility literature annotated by the Biomaterials Annotator
ProjectDebbie/Classifier
SVM classifier pre-trained on biomaterials abstracts
ProjectDebbie/DEBBIE_dictionaries_annotations
Component of the Biomaterials Annotator that maps terms from dictionaries
ProjectDebbie/Decade_of_biomaterials
ProjectDebbie/gate_to_json
ProjectDebbie/polydioxanone_project
Applying text analysis and annotation pipeline to the polydioxanone literature
ProjectDebbie/mesh_tag_extractor
Extracts mesh tags from medline files
ProjectDebbie/Multinomial_classifier
ProjectDebbie/pubmed_standardization
A component to convert the format from pubmed into the input format of the classifier