Public Health Scotland

GitHub-guidance

Guidance and best practice rules for using GitHub within Public Health Scotland

Hospital-Acute-Activity

Code to create Public Health Scotland's Hospital Acute Care Activity publication

phsmethods

An R package to standardise methods used in Public Health Scotland (https://public-health-scotland.github.io/phsmethods/)

phsstyles

Standard Graphic Styles for use in Public Health Scotland (https://public-health-scotland.github.io/phsstyles/)

phstemplates

Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)

R-Resources

resources

Useful resources for the software and methodologies used by the Transforming Publishing team

scotpho-profiles-tool

ScotPHO profiles tool code

technical-docs

Technical documentation, including guidance and best practice for Public Health Scotland (PHS)

Toolkit

Templates and resources for transforming publications

Public-Health-Scotland/R-Resources

Public-Health-Scotland/GitHub-guidance

Guidance and best practice rules for using GitHub within Public Health Scotland

Public-Health-Scotland/Life-Expectancy

Code to generate ScotPHO life expectancy and healthy life expectancy estimates published in ScotPHO online profiles tool

Public-Health-Scotland/scotpho-plotly-charts

Charts for ScotPHO's website using Plotly

Public-Health-Scotland/learnr-intro

Public-Health-Scotland/posit-workbench-job-scheduler

Functions to assist with programmatically launching Workbench Jobs on the Kubernetes cluster, and scheduling these to run a specific time.

Public-Health-Scotland/social-care

Public-Health-Scotland/CASES

Cancer and Adult Screening Engagement and Skills repository

Public-Health-Scotland/git-guide

A quick start guide for using Git and GitHub: https://public-health-scotland.github.io/git-guide/

Public-Health-Scotland/learn-shiny

Public-Health-Scotland/parquet_workshop

Public-Health-Scotland/ahp_dsa

AHP MSK data science accelerator

Public-Health-Scotland/ahp_msk_dashboard

AHP MSK dashboard

Public-Health-Scotland/care-and-wellbeing-dashboard

Public-Health-Scotland/posit-workbench-install-geospatial

Scripts with required configuration to successfully compile and install packages for geospatial analysis in R in the Posit Workbench environment

Public-Health-Scotland/posit-workbench-install-gt

Details of how to install the {gt} package on Posit Workbench

Public-Health-Scotland/SBSS

Reproducible Analytical Pipeline of the Scottish Bowel Screening Programme Statistics (SBSS) publication

Public-Health-Scotland/COPS-public

Public materials related to the COPS project

Public-Health-Scotland/AAA-rupture-audit

Public-Health-Scotland/ATI-ggplot-training

ATI ggplot training

Public-Health-Scotland/chronic-pain

Repository for the Chronic Pain Publication

Public-Health-Scotland/dbplyr_workshop

A workshop for LIST on data extraction, specifically using dbplyr.

Public-Health-Scotland/GPD

Scripts for GPD team business as usual work such as creating GPD files

Public-Health-Scotland/phs-dq-dashboard

Code for the PHS data quality dashboard, built in RShiny. The dashboard contains exploratory analysis on Scottish Morbidity Records data with a focus on data quality.

Public-Health-Scotland/scotpho-common-code

snippets of commonly used R code

Public-Health-Scotland/scotpho-life-expectancy-ca

This code produces the shiny app chart in the following section of the ScotPHO website: Deaths and life expectancy > Data > Council Areas.

Public-Health-Scotland/scotpho-life-expectancy-deprivation

Public-Health-Scotland/scotpho-life-expectancy-hb

This code produces the shiny app chart in the Deaths and life expectancy > Data > NHS Boards section of the ScotPHO website.

Public-Health-Scotland/scotpho-life-expectancy-scot

This code produces the shiny app chart in the Deaths and life expectancy > Data > Scotland section of the ScotPHO website.

Public-Health-Scotland/test-app