Q-KIM

Pinned Repositories

AlphaGo
A replication of DeepMind's 2016 Nature publication, "Mastering the game of Go with deep neural networks and tree search," details of which can be found on their website.
Language:JavaScript0 1 00
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
Language:Jupyter Notebook0 2 00
ascat
ASCAT copy number R package
Language:R0 2 00
ASE_PO
Language:Shell0 2 00
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
0 2 00
bioinformatics
Utilities written for bioinformatics
Language:Perl0 2 00
D3E
Discrete Distributional Differential Expression
Language:Python1 2 00
ginkgo
Cloud-based single-cell copy-number variation analysis tool
Language:JavaScript1 2 00
GTEx
eQTL Detection from GTEx data
Language:Python2 2 00

Q-KIM's Repositories

Q-KIM/GTEx
eQTL Detection from GTEx data
Language:Python2 2 00
Q-KIM/D3E
Discrete Distributional Differential Expression
Language:Python1 2 00
Q-KIM/ginkgo
Cloud-based single-cell copy-number variation analysis tool
Language:JavaScript1 2 00
Q-KIM/CapSeg
CapSeg - Copy Number from Exome Sequencing
Language:R2 0
Q-KIM/cgat
CGAT - Computational Genomics Analysis Tools
Language:Python
Q-KIM/cloneHD
High-definition reconstruction of clonal composition from next-generation sequencing data
Language:C++2 0
Q-KIM/clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
Language:R
Q-KIM/derfinder
R package for DER Finder, a method for differential expression analysis of RNA-seq data
Language:R
Q-KIM/docs
Documentation for all of the googlegenomics repositories.
Language:Python2 0
Q-KIM/gatk
Daniel Klevebring's GATK Repository: contains the core MIT-licensed GATK framework, and custom tools, free for all uses.
Q-KIM/IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Language:Java
Q-KIM/jvarkit
Java utilities for Bioinformatics
Language:Java2 0
Q-KIM/LaggingStrand
Exploring the relationships between DNA replication and mutation.
Language:R2 0
Q-KIM/paper-rgasp3-cov
RGASP3 coverage statistics pipeline
Language:Python2 0
Q-KIM/phangorn
Phylogenetic analysis in R
Language:R
Q-KIM/pipelines
Analysis pipelines.
Language:Python
Q-KIM/PredictiveModel_pipeline
PredictiveModel_pipeline
Language:R
Q-KIM/rails
Ruby on Rails
Language:Ruby1 0
Q-KIM/RestKit
RestKit is a framework for consuming and modeling RESTful web resources on iOS and OS X
Language:Objective-C
Q-KIM/ribosome-profiling-analysis-framework
Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
Language:PHP
Q-KIM/RNA_Imprinting
Identifying imprinted genes from RNA-seq data
Language:R2 0
Q-KIM/Rscripts
R stuff
Language:R
Q-KIM/rstudio
RStudio is an integrated development environment (IDE) for R
Language:Java
Q-KIM/SegCorr
Detecting Correlated Genomic Regions
Language:R
Q-KIM/shiny
Easy interactive web applications with R
Language:R
Q-KIM/SplicePlot
Easily draw publication-quality figures of splicing quantitative trait loci
Language:OpenEdge ABL
Q-KIM/STAR
RNA-seq aligner
Q-KIM/SubcloneSeeker
Computational Framework to reconstructing tumor clone structures
Q-KIM/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Q-KIM/ymap
YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.
Language:Matlab