Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
PyBSASeq
A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method
RepeatModeler
De-Novo Repeat Discovery Tool
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
bioconda-recipes
Conda recipes for the bioconda channel.
canu
A single molecule sequence assembler for genomes large and small.
smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
genomescope
Fast genome analysis from unassembled short reads
FASTK
A fast K-mer counter for high-fidelity shotgun datasets
ClassPro
A K-mer classifier for HiFi reads
RNieuwenhuis's Repositories
RNieuwenhuis/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
RNieuwenhuis/bioconda-recipes
Conda recipes for the bioconda channel.
RNieuwenhuis/canu
A single molecule sequence assembler for genomes large and small.