Dfam-consortium/RepeatModeler

Issues

• MAFFT failed while running RepeatModeler

  #253 opened 5 months ago by sjd028
  2

• FastaDB::compact - Error could not locate file /home/xly/work8/403/repeat/RM_3970586.SunAug270923512023/round-4/sampleDB-4.fa!

  #216 opened a year ago by YDD99
  3

• Error in RepeatClassifier step: Missing RepeatPeps.lib.psq

  #254 opened 5 months ago by athenasyarifa
  0

• No space left on device Error

  #226 opened 5 months ago by Ruiqi-CUB
  1

• sort failed for images/spread1

  #228 opened 5 months ago by tanpham15
  2

• configure freezes at first step

  #247 opened 5 months ago by tallnuttrbgv
  2

• recover from round-6

  #252 opened 5 months ago by XuanZhang-Black
  1

• RepeatModeler stuck at rmblastn with a small fungal genome at "Refining 2 families"

  #251 opened 5 months ago by ishengtsai
  3

• Refiner did not return a consensus error

  #249 opened 5 months ago by athenasyarifa
  12

• Possible version instability between RepeatModeler v2.0.1 and v2.0.4 (and v2.0.5)

  #250 opened 5 months ago by casparbein
  4

• The problem of LTRpipline

  #245 opened 5 months ago by duan12345678
  1

• Could not open *.translation file for reading!

  #248 opened 6 months ago by FeelLiao
  4

• ERROR from search engine (0)

  #239 opened 9 months ago by pure6688
  8

• What is the default search engine used by BuildDatabase?

  #224 opened 5 months ago by Ruiqi-CUB
  1

• Thread option is not passed to RepeatClassifier

  #227 opened 5 months ago by Alteroldis
  1

• How long does it take RepeatModeler to complete the analysis?

  #229 opened 5 months ago by SowmyaPulapet
  1

• Wrong help message for the numAdditionalRounds option

  #231 opened 5 months ago by tomasbruna
  1

• Can't locate File/Which.pm in @INC

  #232 opened 5 months ago by luciaximena
  14

• consensi.fa is empty

  #235 opened 5 months ago by 44314474
  2

• Error: xxx/tmpSample.fa not found

  #236 opened 5 months ago by ekaralashvili
  2

• error in builddatabase

  #238 opened 5 months ago by weirdo-onlooker
  2

• ROUND5 ERROR from search engine (0)

  #242 opened 5 months ago by pure6688
  3

• Long Comparison Time

  #243 opened 5 months ago by wwyyxx517
  1

• Problem with RepeatMasker after successful RepeatModeler run

  #244 opened 5 months ago by pedres
  4

• Error in Clustering Step of LTR Pipeline

  #241 opened 9 months ago by simone-says
  4

• Cant run rmblastn

  #246 opened 5 months ago by ali21049
  1

• 0 clean candidates remained after cleaning up candidates with LTR_retriever

  #237 opened 9 months ago by Zoe133
  11

• Broken symbolic link on error in LTR_Retriever

  #240 opened 6 months ago by benfulton
  1

• LTR_retriever failed to generate a file

  #230 opened a year ago by cyycyj
  4

• Improving recovery mode

  #225 opened a year ago by Alteroldis
  1

• how to finish an interrupted RepeatModeler run after manually finishing LTR_retriever

  #233 opened 10 months ago by fanhuan
  1

• RepeatClassifier error "No database indicated or it is an empty file."

  #234 opened a year ago by kdarragh1994
  4

• Can't locate 'setThreadByQuery' via package "NCBIBlastSearchEngine" at RepeatModeler/Refiner

  #220 opened a year ago by tania-k
  1

• recoveryDir issue

  #223 opened a year ago by rhysf
  0

• Segmentation fault and no recovery possible

  #222 opened a year ago by RNieuwenhuis
  0

• Local RepeatModeler and RepeatMasker installation slower than conda install

  #217 opened a year ago by drs
  9

• issue with alignAndCallConsensus.pl script

  #221 opened a year ago by s-travers
  0

• RepeatModeler 2.0.4 results no longer includes "Type=LTR"

  #212 opened 2 years ago by piosierra
  2

• build_lmer_table failed. Exit code 65280

  #219 opened a year ago by chhhhai
  2

• Repeatmodeler will not install in Mac OS monterey

  #215 opened a year ago by emmannaemeka
  3

• RepeatModeler ended with: famdef failed. Exit code 768

  #214 opened a year ago by kdarragh1994
  2

• Does -srand <number> option cause RepeatModeler to be deterministic?

  #203 opened a year ago by alankuo1
  6

• Unexpected filename for NINJA

  #213 opened a year ago by liamfriar
  4

• How to make one non-redundant TE library for multiple genomes?

  #211 opened a year ago by GRGong
  1

• Job directory RM_.* cannot be automatically deleted after the run ends

  #204 opened a year ago by bitahu
  1

• LTR Harvest - core dumped

  #206 opened a year ago by pedro-mmartins
  1

• RepeatScout did not return any models & ERROR from search engine

  #208 opened a year ago by ywddwed
  1

• the lastest version of repeatmodeler was error when running it, reveals "ERROR from search engine (3) "

  #205 opened 2 years ago by Jiangjiangzhang6
  4

• LTRHarvest - Ninja parameter

  #207 opened 2 years ago by Yiguan
  1

• NINJA segmentation fault

  #209 opened 2 years ago by rmhubley
  0