Ruiqi-CUB

PhD student in the Department of Ecology and Evoloutionary Biology

University of Colorado BoulderBoulder

Pinned Repositories

ipyrad
Interactive assembly and analysis of RAD-seq data sets
Language:Jupyter Notebook75 5 57341
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Language:Perl246 5 28649
RepeatModeler
De-Novo Repeat Discovery Tool
Language:Perl206 8 25223
gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
Language:C++400 9 13941
phytools
Language:R220 21 14656
MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
Language:Python176 4 8429
FraginaeTranscriptomeProject2023
0 1 00
Phylogenomics2023
00
TmaximaGiantClamGenome
0 1 00
TrinityTutorial
0 1 00

Ruiqi-CUB's Repositories