Reed-CompBio/protein-weaver

Issues

• New error for search input with only outgoing Reg edges

  #152 opened 2 months ago by oliverfanderson
  2

• Generate list of proteins in current subnetwork

  #151 opened 16 days ago by oliverfanderson
  0

• Rearranging stats section

  #129 opened 3 months ago by ctrlaltaf
  3

• Add regulatory degree as node property

  #154 opened a month ago by oliverfanderson
  0

• Add Cytoscape export feature

  #156 opened a month ago by ctrlaltaf
  0

• Optimize for mobile use

  #141 opened 2 months ago by oliverfanderson
  1

• add source database as column in all datasets

  #149 opened a month ago by oliverfanderson
  0

• Glossary of terms

  #153 opened 2 months ago by oliverfanderson
  0

• make legend collapsible

  #150 opened 2 months ago by oliverfanderson
  0

• Add URLs to PDB

  #148 opened 2 months ago by oliverfanderson
  0

• Styling regulatory interactions

  #109 opened 4 months ago by ctrlaltaf
  2

• Link to uniprot/gene ontology query on error

  #147 opened 2 months ago by ctrlaltaf
  0

• Add more species

  #87 opened 7 months ago by oliverfanderson
  7

• Update Github Pages

  #143 opened 2 months ago by ctrlaltaf
  0

• Info about node sizes

  #133 opened 2 months ago by ctrlaltaf
  0

• Consider similarity of GO terms

  #81 opened 7 months ago by oliverfanderson
  3

• GO term suggestion only populate with GO terms that have edges to proteins in that species

  #97 opened 5 months ago by ctrlaltaf
  1

• reset query params when changing species

  #130 opened 2 months ago by ctrlaltaf
  0

• Graph disappears when switching tabs

  #128 opened 3 months ago by AMINOexe
  0

• Node sizes are relative to how many outgoing edges it has

  #96 opened 3 months ago by ctrlaltaf
  1

• URL only includes GO term ID and Protein ID

  #113 opened 3 months ago by ctrlaltaf
  1

• Adding information about how many proteins are annotated to the GO term

  #110 opened 3 months ago by ctrlaltaf
  1

• Graph exploration input fields clears when exploring

  #118 opened 3 months ago by ctrlaltaf
  1

• "extracellular matrix" GO dropdown issues

  #116 opened 3 months ago by annaritz
  0

• Hitting "Enter": run the query or select the dropdown?

  #115 opened 3 months ago by annaritz
  0

• Refactoring CSS file

  #114 opened 4 months ago by ctrlaltaf
  2

• make GO term search bar wider

  #107 opened 3 months ago by annaritz
  0

• Make file-naming conventions more consistent in data folders

  #91 opened 4 months ago by oliverfanderson
  2

• Select proteins with specific number of common GO terms

  #79 opened 7 months ago by oliverfanderson
  1

• Loading bar shows progress

  #78 opened 7 months ago by ctrlaltaf
  0

• Select a group of proteins grouped by function

  #80 opened 7 months ago by oliverfanderson
  1

• Add statistics for how the subnetwork is significant

  #83 opened 4 months ago by oliverfanderson
  1

• Clean up repo

  #99 opened 4 months ago by oliverfanderson
  0

• UI Redesign Ideas

  #76 opened 4 months ago by ctrlaltaf
  2

• Add documentation page

  #89 opened 5 months ago by ctrlaltaf
  1

• Make links to information on selected protein more prominent

  #88 opened 5 months ago by oliverfanderson
  2

• Add feature to automatically create a github issue when encountering a wrong query

  #94 opened 5 months ago by ctrlaltaf
  2

• Create script to automatically set up local development of proteinweaver

  #95 opened 5 months ago by ctrlaltaf
  0

• Frontend Error/UX issues

  #71 opened 6 months ago by ctrlaltaf
  1

• Add auto-testing for Neo4j database

  #93 opened 6 months ago by ctrlaltaf
  0

• Find more Zebrafish data

  #82 opened 6 months ago by oliverfanderson
  2

• Add pro-GO relationships among parent GO terms

  #69 opened 6 months ago by annaritz
  2

• multiple UniProt IDs generate multiple source nodes in the network

  #70 opened 6 months ago by annaritz
  1

• Add LLM-based text processing for queries

  #84 opened 7 months ago by oliverfanderson
  0

• Add ability for users to upload own interactome with GO annotations?

  #85 opened 7 months ago by oliverfanderson
  0

• Add predicted GO term annotations with uncertainty models

  #86 opened 7 months ago by oliverfanderson
  0

• VPS can reset neo4j.service unpredictably

  #72 opened 7 months ago by ctrlaltaf
  0

• Make it clear if source node is also annotated to GO term

  #74 opened 7 months ago by oliverfanderson
  0

• Input name inconsistency

  #77 opened 7 months ago by ctrlaltaf
  0

• autocomplete queries anywhere in the name

  #73 opened 8 months ago by annaritz
  0