VM for SFN18

Question

VM for SFN18

Opened this issue 6 years ago · 11 comments

Hi @mjtravers
cc: @satra , @yarikoptic , @jbpoline

I was told that we are not creating a new VM, and we will be using the OHBM one. Could you please confirm that this link contains the latest version: https://training.repronim.org/reprotraining.ova

Want to be sure that we're all testing the same one

Answer 1 · 2018-10-20T23:02:57.000Z

Yes, that's the download link for the VM we used at OHBM. Let me know if any issues come up and we can tweak it.

…

On Sat, Oct 20, 2018 at 5:06 PM Dorota Jarecka ***@***.***> wrote: Hi @mjtravers <https://github.com/mjtravers> cc: @satra <https://github.com/satra> , @yarikoptic <https://github.com/yarikoptic> , @jbpoline <https://github.com/jbpoline> I was told that we are not creating a new VM, and we will be using the OHBM one. Could you please confirm that this link contains the latest version: https://training.repronim.org/reprotraining.ova Want to be sure that we're all testing the same one — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#3>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AC1YiVXlaZ79n3J-t0cpm5Fy1sx4i41Oks5um5BPgaJpZM4XyIhp> .

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Answer 2 · 2018-10-23T13:34:24.000Z

Also see #4 where I added it under annex -- needs feedback

Answer 3 · 2018-10-23T14:35:44.000Z

ok, let me know when the new vm is under the link

Answer 4 · 2018-10-23T15:04:43.000Z

what do you mean @djarecka ? the VM to be tested and probably to be used is the old OHBM one AFAIK. So no need to wait. that #4 is just to reference it via git-annex

Answer 5 · 2018-10-23T15:22:39.000Z

@yarikoptic -oh, ok, sorry didn't read the PR carefully, thought that you added something to the vm.

Answer 6 · 2018-10-26T01:38:12.000Z

@mjtravers
I think

sudo apt-get update; sudo apt-get install -y git-annex-standalone; pip install --upgrade datalad[full] datalad-neuroimaging datalad-container

should be sufficient! Thanks!

Answer 7 · 2018-10-26T14:35:53.000Z

@yarikoptic
I made the datalad upgrade to the python packages in the conda environment: section2
The other sections don't appear to need the upgrade.
Here's the new ova: https://training.repronim.org/reprotraining.ova
When you give it a green light, I will alert JB the VM is ready.

Answer 8 · 2018-10-26T14:55:41.000Z

thanks @mjtravers , downloading to test

Answer 9 · 2018-10-26T17:40:55.000Z

FWIW, reran http://onerussian.com/tmp/rerunall.sh script within, which should be what we have in those reproin/datalad sections -- seems to work correctly all the way. So we might be all set to go on that end, unless something else to be done for other sections?

Answer 10 · 2018-10-26T20:09:24.000Z

@jbpoline No one has chimed in with additional updates to the VM so it is posted and ready for downloading. The instructions are in the repo README: https://github.com/ReproNim/sfn2018-training

Here's the download URL: https://training.repronim.org/reprotraining.ova

Answer 11 · 2018-10-28T02:04:16.000Z

@mjtravers @djarecka @yarikoptic Great - sorry I missed this and sent an email - will advertised the ova asap :)