Ripkelab/ricopili

Issues

• Change genome build of standard ricopili daner format?

  #70 opened 3 years ago by theclairecamp
  0

• No access to dependencies on LISA

  #69 opened 4 years ago by JoniColeman
  1

• Error when running preimp_dir

  #68 opened 4 years ago by pryabinin
  2

• danscore_multiplot_2 expects configfile at $HOME/ricopili.conf and not at $RPHOME/ricopili.conf

  #67 opened 5 years ago by beeemT
  0

• postimp_navi script fails with --gwclump flag because of inconsistent current working directory

  #66 opened 5 years ago by beeemT
  0

• Unknown file type used for job bcftools_impute2 in script my.prepvcf_imp2

  #64 opened 5 years ago by beeemT
  1

• Syntax error in filtnorm_filter

  #63 opened 6 years ago by robkar
  0

• wget 'illegal option' in my.wget

  #62 opened 6 years ago by robkar
  0

• Building a docker image with ricopili

  #57 opened 6 years ago by oskarvid
  3

• Cannot tell if RP install succeeded...expected files not written

  #61 opened 6 years ago by mchimenti
  0

• install fails for "custom" cluster

  #58 opened 6 years ago by v-a-s-a
  2

• Long SNP names crash PCA

  #45 opened 6 years ago by rkwalters
  2

• rp_config doesn't create clumper_info

  #56 opened 6 years ago by rkwalters
  1

• daner Direction field potentially unreliable

  #55 opened 8 years ago by rkwalters
  1

• Imputation crashes if genomic chunks are not quite empty

  #23 opened 9 years ago by rkwalters
  3

• QC with a Trio dataset that only has cases

  #15 opened 9 years ago by jigold
  3

• clump_nav3 treats SNPs with lower case alleles as indels

  #38 opened 9 years ago by rkwalters
  2

• Imputation changes missing phenotypes to controls

  #30 opened 9 years ago by rkwalters
  1

• trio flag broken for pcaer

  #28 opened 9 years ago by rkwalters
  0

• Running multiple jobs prevents detection of stuck jobs

  #26 opened 9 years ago by rkwalters
  0

• PCA summary plots rely on fam file over phenotype

  #19 opened 9 years ago by rkwalters
  0