RobertoRun

RobertoRun's Stars

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.3k2208502.2k

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++77546686263

• KEJIXIAOLU/FQ

  3664255

• cggh/scikit-allel

  A Python package for exploring and analysing genetic variation data

  Language:Jupyter Notebook2872526350

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python28694685

• comprna/SUPPA

  SUPPA: Fast quantification of splicing and differential splicing

  Language:Python2581418261

• jtlovell/GENESPACE

  Language:R186716525

• shangshanzhizhe/Work_flow_of_population_genetics

  整理常用的群体遗传学分析流程和脚本

  Language:Perl904828

• smirarab/sepp

  Ensemble of HMM methods (SEPP, TIPP, UPP)

  Language:Python85167238

• Kyoko-wtnb/FUMA-webapp

  Source code of FUMA GWAS web application

  Language:Blade5352023

• Ensembl/postgap

  Linking GWAS studies to genes through cis-regulatory datasets

  Language:Jupyter Notebook39816321

• alek0991/iSAFE

  Pinpoints the mutation favored by selection

  Language:Python3241711

• yairf/SDS

  R code to compute the Singleton Density Score (SDS)

  Language:R28759

• YuLab-SMU/plotting-tree-with-data-using-ggtreeExtra

  Language:TeX24507

• plantformatics/Socrates

  Language:HTML213118

• caulilin/QTG_Seq

  Language:R203010

• conJUSTover/pSONIC

  The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).

  Language:HTML193123

• yiliao1022/Pepper3Dgenome

  Language:R14212

• plantformatics/maize_single_cell_cis_regulatory_atlas

  Language:R11235

• sszhou9/intact-LTR-RTs

  Language:Python811

• dlewis27/SSRgenotyper

  find SSRs in a population

  Language:Python7213

• kensung-lab/IndelEnsembler

  Language:C++5250

• JunpengShi/Maize_resequencing

  Sequencing and analysis of 877 wild teosintes, landraces and maize cultivars

  Language:Shell4100

• dspeth/ASM_clust

  protein clustering using alignment score matrices

  Language:Shell2000

• RBVI/dasp3

  The Latest DASP implementation

  Language:Java21

• berkeleyphylogenomics/flowerpower

  homolog gathering algorithm

  Language:Perl120

• berkeleyphylogenomics/sci-phy

  phylogenetic clustering algorithm

  1201

• IGBB/Kokia

  Kokia Genus Survey

  Language:R10

• mtrw/ReMIXTURE

  R implementation of the ReMIXTURE method, first described in Rabanus-Wallace & Tripodi (2021).

  Language:R1111

• USDA-ARS-GBRU/PeeDeeCottonBreedingProgram_Diversity

  Supplemental materials for Billings et al *G3* (2021).

  Language:R120