Rosemeis/pcangsd

Issues

• ModuleNotFoundError: No module named 'pcangsd.pcangsd'; 'pcangsd' is not a package

  #92 opened 4 months ago by IgnasiLucas
  5

• Packaging in Conda

  #79 opened a year ago by lecorguille
  3

• wrong version numbering

  #91 opened 4 months ago by smoors
  0

• How is the K chosen in the program?

  #82 opened 5 months ago by yksakana
  4

• pcangsd didn't converge!!

  #86 opened 5 months ago by NeethuCherukuri
  7

• selection and pcadapt output questions

  #90 opened 5 months ago by lkrichardson
  2

• Covariance matrix estimation does not converge when using one thread

  #89 opened 5 months ago by huiqingyeooo
  2

• Import Error

  #83 opened a year ago by isnmn
  8

• --sites_save options reports only 0s

  #88 opened 7 months ago by shyama-mama
  1

• ZeroDivisionError: float division by zero, new "old" error

  #87 opened 8 months ago by cbossu
  1

• zcat: can't stat

  #85 opened 10 months ago by EwersAquaGenomics
  1

• -sites_save returning only 0s

  #84 opened a year ago by nickylustenhouwer
  3

• -sites_save option outputs zero value for all markers

  #81 opened a year ago by yksakana
  2

• request: add SNP locus metadata to SNP weights output?

  #76 opened a year ago by TeresaPegan
  1

• build failure when installing with conda

  #80 opened a year ago by NadyaMamoozadeh
  1

• P-values equal to 0 from pcadapt

  #77 opened a year ago by akimmitt
  7

• Feature Request: Improved Convergence Checking

  #74 opened 2 years ago by ajasonowicz
  2

• latest version (1.10) has not been tagged

  #78 opened a year ago by jowodo
  3

• Adding a pyproject.toml file

  #75 opened a year ago by alxsimon
  3

• output of -selection

  #70 opened 2 years ago by shirasegoby
  5

• Inflated p-values from selection scan?

  #49 opened 4 years ago by kellybarr
  8

• Cythonized pcangsd.py not working

  #61 opened 3 years ago by emrullahub
  11

• cannot import name 'reader_cy' from 'pcangsd'

  #71 opened 2 years ago by cnxiaobo94
  3

• SNP loading values from PCs using --selection_e

  #73 opened 2 years ago by HomereAMK
  3

• Kinship matrix in pcangsd

  #72 opened 2 years ago by ThibauldMichel
  1

• ImportError: cannot import name 'reader_cy' from pcangsd

  #69 opened 2 years ago by ashno376
  1

• Different result among versions, same dataset

  #68 opened 2 years ago by Ittybittyweeny
  4

• Confussion between tutorials

  #67 opened 2 years ago by Ittybittyweeny
  2

• How to format a --filterSites file?

  #66 opened 2 years ago by TeresaPegan
  1

• How to perform a HWE test?

  #65 opened 2 years ago by beausoleilmo
  2

• Segmentation fault (core dumped)

  #60 opened 3 years ago by katcatalano
  2

• PCAngsd detects one fewer sites than it's given

  #64 opened 2 years ago by jtoy7
  4

• How to resolve an apparent memory issue PCAngsd

  #63 opened 2 years ago by BKrek89
  3

• No module named 'reader_cy'

  #54 opened 3 years ago by DcornishUCL
  7

• Cynthonization behaving strangely

  #62 opened 2 years ago
  6

• Support for VCF input

  #59 opened 3 years ago by fgvieira
  0

• [Support] Using PCAngsdv2 to determine kinship

  #58 opened 3 years ago by fidibidi
  0

• Selection scan - positions?

  #56 opened 3 years ago by hyperoplus
  5

• expected unicode, got str

  #57 opened 3 years ago by yungsiyebu
  5

• Negative eigenvalues

  #55 opened 3 years ago by elizeng
  1

• Sample projection

  #53 opened 3 years ago by xinsun1
  2

• Memory issue while parsing beagle file

  #50 opened 3 years ago by ddenney1
  2

• Genotype likelihood matrix format inside pcangsd (L)

  #51 opened 3 years ago by alxsimon
  2

• TypeError: 'offset' is an invalid keyword argument for fromfile()

  #48 opened 4 years ago by samarth8392
  1

• NJ Tree and PCAdapt outputs

  #47 opened 4 years ago by emilya21
  3

• error: "Argument 'beagle' has incorrect type"

  #46 opened 4 years ago by nreid
  2

• UnboundLocalError: local variable 'pr' referenced before assignment

  #45 opened 4 years ago by lauraivillegasr
  2

• -filter error

  #44 opened 4 years ago by alxsimon
  7

• PC loadings?

  #43 opened 4 years ago by TeresaPegan
  4

• Large log likelihood when running Admixture

  #42 opened 4 years ago by bpbentley
  2