Pinned Repositories
SpatialInferCNV
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
cellcharter
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
CellNeighborEX
CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
InSituType
An R package for performing cell typing in SMI and other single cell data
BRCA_Xenium
NBL_Germline
RCB
SPIAT