TrigosTeam/SPIAT

Issues

• NA result of crossing_of_crossK() function

  #39 opened 6 months ago by navern0net
  3

• clustering problem

  #34 opened 7 months ago by JessicaP94
  1

• Automatically batch export of thresholds and images from predict_phenotypes() Function

  #32 opened 7 months ago by chujun225
  0

• reading in data to SPIAT

  #30 opened 7 months ago by cathalgking
  5

• How can we get the neighborhood classification for each cells?

  #37 opened 7 months ago by Feng-Zhang
  1

• Define cell types based on the absence of markers

  #33 opened a year ago by fuerzhou
  0

• Convert spatialExperiment object into Seurat object

  #24 opened a year ago by JessicaP94
  2

• Big data set causing R to crash when using "identify_neighbourhoods" with "hierarchical" method

  #28 opened a year ago by ayhanxian
  1

• Question in Quantifying cell colocalisation

  #31 opened a year ago by SGIlabes
  1

• Incorrect intensity threshold due to zero-inflated distribution

  #29 opened a year ago by lhollestein
  0

• Not able to generate Seurat Object using 10xgenomics Data

  #26 opened a year ago by apsuresh
  0

• Importing annotation and specifying exclusion (negative) markers

  #23 opened a year ago by prestigious-bat3868
  2

• calculate_spatial_autocorrelaton is not working

  #11 opened a year ago by yuvibim08
  4

• Help with marker_prediction_plot

  #21 opened a year ago by CPUriarte
  5

• calculate_pairwise_distances_between_celltypes not working

  #20 opened a year ago by JessicaP94
  4

• image_splitter() function is not working

  #12 opened 2 years ago by yuvibim08
  1

• AUC_of_cross_function.R AUC can > 1

  #16 opened 2 years ago by Isaacyz
  1

• Encountering errors for analysis related to marker intensity.

  #15 opened 2 years ago by yuvibim08
  2

• Encountering error for plot_cell_categories function multiple times

  #13 opened 2 years ago by yuvibim08
  2

• dimensionality_reduction_plot function not working

  #14 opened 2 years ago by yuvibim08
  6

• After deletion of mis-classified cells from the image, TSNE plot is not generating

  #10 opened 2 years ago by yuvibim08
  3

• Scatter Plot not generating

  #9 opened 2 years ago by yuvibim08
  3