SPAAM-community/amdirt

Issues

• Add AMDirT F1000 paper to README

  #155 opened 2 months ago by jfy133
  0

• Webassembly/stlite AMDirT viewer won't load using Firefox

  #158 opened 3 months ago by maxibor
  0

• packaging.version.InvalidVersion: Invalid version: 'latest'

  #157 opened 4 months ago by theHatIsBack
  4

• Make clearer that AMDirT viewer/convert is only for ENA/SRA fastq files (no FASTAs(?) etc) in interface/docs

  #152 opened 7 months ago by jfy133
  0

• Sample_Name containing spaces for nf-core/eager input table

  #151 opened 7 months ago by aidaanva
  0

• Colour_Chemistry incorrect value for nf-core/eager tsv

  #150 opened 7 months ago by aidaanva
  0

• `AMDirT download` functionality to download AncientMetagenomeDir tables

  #146 opened 8 months ago by jfy133
  2

• (Minor) Make a figure describing updated workflow that includes autofill

  #137 opened 8 months ago by jfy133
  1

• `convert` still reports sample table-level references even if a filtered libraries table given to --libraries

  #147 opened 8 months ago by jfy133
  0

• Include full ENA table as optional extra output when running `amdirt autofill`

  #144 opened 8 months ago by jfy133
  0

• Selecting release "master" leaves AMDirT viewer unable to render library information from study not present in any official release

  #143 opened 8 months ago by alexhbnr
  0

• (Minor) Add `convert` tutorial to manuscript and docs

  #135 opened 10 months ago by jfy133
  3

• Update tutorial for AMDirT viewer to reflect new library filtering feature

  #141 opened 10 months ago by maxibor
  0

• (Minor) Add validation check for `convert` that a sample table has been added (e.g. check relevant columns, if not ask 'is this a sample table'?)

  #139 opened 10 months ago by jfy133
  0

• (Minor) Add SRAtoolkit as download option

  #138 opened 10 months ago by jfy133
  0

• Add option to display library information in AMDirT viewer

  #119 opened 10 months ago by alexhbnr
  1

• AMDirT viewer always downloads nf-core/mag configuration files when pressing any button

  #127 opened 10 months ago by jfy133
  0

• Reviewer Comments To ADdress

  #134 opened a year ago by jfy133
  0

• AMDirT commands always print a cache_data_api warning

  #110 opened a year ago by jfy133
  6

• Add a button to download the actual table (sample metadata) selected in the viewer

  #131 opened a year ago by ZoePochon
  3

• Can't launch viewer

  #129 opened a year ago by plasmid02
  7

• Improving validation support for studies reusing older studies/have multiple PRJ codes

  #128 opened a year ago by jfy133
  0

• Dependency update required for JSONSchema referencing

  #125 opened a year ago by jfy133
  0

• Make logo darkmode friendly :eyes:

  #122 opened a year ago by jfy133
  1

• Update curl script to also check md5sum

  #120 opened a year ago by jfy133
  0

• Ugly validate error when float given to integer column

  #121 opened a year ago by jfy133
  0

• Incorrectly hardcoded column name for libraries

  #118 opened 2 years ago by jfy133
  2

• Add ~to pypi~ & bioconda?

  #71 opened 2 years ago by jfy133
  1

• Add support for ffq download scripts

  #103 opened 2 years ago by jfy133
  3

• Autofill command fails because the column "read_count" cannot be converted into integer

  #116 opened 2 years ago by alexhbnr
  0

• Prerelease issues

  #109 opened 2 years ago by jfy133
  5

• convert should have separate flags and logging for all separate table exports with standardised names

  #112 opened 2 years ago by jfy133
  0

• Add filter GUI tutorial

  #70 opened 2 years ago by jfy133
  1

• Add nf-core/taxprofiler samplesheet

  #105 opened 2 years ago by jfy133
  3

• Get relevant columns from ENA

  #76 opened 2 years ago by jasmezz
  0

• Add download scripts and BibTex citations to as options`convert`

  #101 opened 2 years ago by jfy133
  1

• Add new contributors to CLI

  #73 opened 2 years ago by maxibor
  2

• Create samplesheet input file for nf-core/mag

  #82 opened 2 years ago by rozwalak
  4

• Add support for metaBIT (PALEOMIX) input yaml

  #72 opened 2 years ago by jfy133
  2

• Add user inferface for autofill

  #77 opened 2 years ago by jasmezz
  1

• Typo in validate/test-dataset help

  #68 opened 2 years ago by jfy133
  1

• No obvious way to clear selection of table

  #78 opened 2 years ago by jfy133
  3

• Change position of bottom scroll bar

  #87 opened 2 years ago by mlo89
  1

• Allow specifying the number of rows to display in table in filter

  #90 opened 2 years ago by jfy133
  1

• Error when trying to download a complete table

  #86 opened 2 years ago by yaxalponce
  1

• Select all check box absent in column

  #88 opened 2 years ago by mlo89
  1

• "In range" selection of dates not working as expected

  #89 opened 2 years ago by yaxalponce
  1

• Change the position of Validate selection in the filtering tool

  #80 opened 2 years ago by rozwalak
  3

• Add -h next to --help

  #74 opened 2 years ago by rozwalak
  1

• test issue

  #75 opened 2 years ago by jfy133
  0