SamusRam

SamusRam's Stars

• shap/shap

  A game theoretic approach to explain the output of any machine learning model.

  Language:Jupyter Notebook23k2452.5k3.3k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python12.9k2298632.3k

• karpathy/ng-video-lecture

  Language:Python3.6k5730942

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k47561502

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.5k32836199

• agemagician/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1.1k32151154

• a-r-j/graphein

  Protein Graph Library

  Language:Jupyter Notebook1k18155132

• sicara/tf-explain

  Interpretability Methods for tf.keras models with Tensorflow 2.x

  Language:Python1k5191111

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C84018339103

• lucidrains/bottleneck-transformer-pytorch

  Implementation of Bottleneck Transformer in Pytorch

  Language:Python675171682

• tunguz/ML_Resources

  GitHub Repo with various ML/AI/DS resources that I find useful

  45632137

• rxn4chemistry/rxnmapper

  RXNMapper: Unsupervised attention-guided atom-mapping. Code complementing our Science Advances publication on "Extraction of organic chemistry grammar from unsupervised learning of chemical reactions" (https://advances.sciencemag.org/content/7/15/eabe4166).

  Language:Python293113169

• tttianhao/CLEAN

  CLEAN: a contrastive learning model for high-quality functional prediction of proteins

  Language:Python22974746

• gatagat/lap

  Linear Assignment Problem solver (LAPJV/LAPMOD).

  Language:Python21864268

• agemagician/Ankh

  Ankh: Optimized Protein Language Model

  Language:Python21481919

• CellProfiling/HPA-Cell-Segmentation

  Language:Python955926

• lmassaron/kaggledays-2019-gbdt

  Kaggle Days Paris - Competitive GBDT Specification and Optimization Workshop

  Language:Jupyter Notebook9210035

• anton-bushuiev/PPIRef

  Dataset and package for working with protein-protein interactions in 3D

  Language:Jupyter Notebook85358

• brandontrabucco/design-baselines

  Baselines for Model-Based Optimization

  Language:Python504411

• anton-bushuiev/PPIformer

  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)

  Language:Jupyter Notebook44564

• sokrypton/map_align

  Contact map alignment

  Language:C++397015

• kirjner/GGS

  This repository implements Gibbs sampling with Graph-based Smoothing

  Language:Python36315

• pluskal-lab/MassSpecGym

  MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

  Language:Jupyter Notebook321235

• ratthachat/awesome-biochem-ai

  Curated list on Deep Transformers Applications on Biology and Chemistry

  17301

• ratthachat/deep-rna

  Easy & Pretrained SOTA Deep Learning for RNA strings

  Language:Jupyter Notebook12101

• roman-bushuiev/DreaMS_legacy

  DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)

  Language:Jupyter Notebook6112

• KoubaPetr/CoVAMPnet

  Language:Python4101

• anton-bushuiev/MassSpecGym

  MassSpecGym: A benchmark for the discovery and identification of molecules

  Language:Jupyter Notebook2000

• CalounovaT/TPS

  Terpene synthases mining project

  Language:Python2101

• MichalPospech/Bioinformatic-data-collector

  Tool to get data from bioinformatic databases

  Language:Python1101