tttianhao/CLEAN

Issues

• Set Up Questions

  #48 opened 4 months ago by emilyhyde
  0

• Annotating functions of proteins having more than 1022 amino acid residues

  #47 opened 5 months ago by Sourdoc
  1

• No such file or directory: 'results/inputs/init_maxsep.csv'

  #18 opened 2 years ago by rams2110
  3

• Changes in dataset

  #46 opened 7 months ago by doxxitxxyoung
  1

• FileNotFoundError: [Errno 2] No such file or directory: './data/esm_data/D4AXL1.pt'

  #44 opened 8 months ago by dreamfly999
  0

• Using local clean for large-scale data prediction

  #45 opened 8 months ago by sjy-eyujun
  0

• Just one EC

  #43 opened 10 months ago by Thexiyang
  0

• data clustering and split

  #42 opened 10 months ago by elgeekim
  2

• offline tool issue with the training

  #40 opened 10 months ago by Bio-finder
  2

• Details about data split

  #24 opened 10 months ago by yangzhao1230
  1

• Cannot reproduce results in README

  #41 opened 10 months ago by pgmikhael
  2

• The cross-validation process details.

  #35 opened a year ago by jixiang-all
  3

• Job failed due to undefined. Please try again, or click the feedback link at the bottom of the page to report a problem.

  #39 opened a year ago by AcetylCoALab
  0

• Duplicated amino acid sequece in datasets

  #38 opened a year ago by YoungJaeBae
  0

• How to set parameters？

  #37 opened a year ago by moonhuwaa
  2

• How to get embedding distance between the query protein and the CLEAN-predicted EC number

  #34 opened a year ago by kaden1670
  3

• on single sequence query: ValueError: Only one class present in y_true. ROC AUC score is not defined in that case.

  #36 opened a year ago by emilyvansyoc
  2

• problem with job at web server

  #22 opened a year ago by daisykuma22
  1

• Attempting to deserialize object on a CUDA

  #29 opened a year ago by MBinso
  2

• No such file or directory: './gmm_test/GMM_100_500_0.pkl'

  #32 opened a year ago by kaden1670
  2

• How to filter the prediction results based on the pairwise distance between cluster center of EC number?

  #33 opened a year ago by xylapple2013
  1

• Questions about querying unclassified proteins

  #30 opened a year ago by kaden1670
  1

• pretrained model

  #31 opened a year ago by OrangeCat7777777
  1

• Inquiry about the inplementation of SupCon-Hard loss

  #26 opened a year ago by yangzhao1230
  2

• how can I get Confidencel Level ?

  #27 opened a year ago by zhangzhenhuajack
  1

• training & validation details

  #28 opened a year ago by artcmd
  1

• Is there a threshold for relatively reliable prediction of pairwise distance

  #23 opened a year ago by timeresistance1996
  1

• non-deterministic behavior in inference

  #25 opened a year ago by pagpires
  1

• Some confusion about the creation of positive and negative sample pairs

  #20 opened 2 years ago by USTC-xlab
  1

• FileNotFoundError: [Errno 2] No such file or directory: './data/esm_data/P24665_0.pt'

  #19 opened 2 years ago by zas97
  1

• Some confusion about Fig 2.F in the paper

  #21 opened 2 years ago by sirius777coder
  0

• ValueError: The number of weights does not match the population

  #17 opened 2 years ago by Zachaha
  3

• Error when inference with p-value in CPU only mode

  #12 opened 2 years ago by AxenArk
  2

• a bug on `random_positive` in `dataloader.py`

  #13 opened 2 years ago by 1511878618
  4

• Dataset contain duplicate structures

  #14 opened 2 years ago by zas97
  3

• No such file or directory: './data/esm_data/WP_063460136.pt'

  #10 opened 2 years ago by zas97
  1

• Error:

  #9 opened 2 years ago by AaroncrowAries
  2

• There have a problem when we run the command "python CLEAN_infer_fasta.py --fasta_data price"

  #6 opened 2 years ago by liaohu1231
  6

• Request to clarify license

  #8 opened 2 years ago by LRParser
  1

• bad gateway in webserver

  #7 opened 2 years ago by itiago
  2

• Question to protein language model

  #5 opened 2 years ago by wangleiofficial
  1

• Testing 1.2 Quickstart

  #1 opened 2 years ago by Mjvolk3
  1