SandyRogers
Scientific software developer (mostly Python/Jupyter, Python/Django, and Javascript/React).
EMBL-EBICambridge, UK
SandyRogers's Stars
auto-mat/django-import-export-celery
Run django-import-export processes in celery
linkml/linkml
Linked Open Data Modeling Language
cidgoh/DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
jesseduffield/lazydocker
The lazier way to manage everything docker
apple/pkl
A configuration as code language with rich validation and tooling.
liblaber/sdk-code-gen
LibLab.com SDK Code Generator
mendhak/docker-http-https-echo
Docker image that echoes request data as JSON; listens on HTTP/S, useful for debugging.
piercefreeman/mountaineer
Mountaineer is a batteries-included web framework for Python.
swagger-api/swagger-codegen
swagger-codegen contains a template-driven engine to generate documentation, API clients and server stubs in different languages by parsing your OpenAPI / Swagger definition.
bachob5/Food-Nutrition-Microbiome
rivo/tview
Terminal UI library with rich, interactive widgets — written in Golang
trashnroll/django-abnorm
Abnorm is a django denormalization toolkit
sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
janhq/jan
Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)
BioContainers/multi-package-containers
Testing building mulled containers for multi-requirement tools.
seqeralabs/seqera-kit
Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
microsoft/playwright
Playwright is a framework for Web Testing and Automation. It allows testing Chromium, Firefox and WebKit with a single API.
PrefectHQ/marvin
✨ Build AI interfaces that spark joy
nathan-hess/docker-slurm
Docker images with Slurm Workload Manager installed
giovtorres/slurm-docker-cluster
A Slurm cluster using docker-compose
goodwright/nextflow.py
Python wrapper around Nextflow.
marimo-team/marimo
A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
ResearchObject/bh2023-enabling-fair-digital-objects
Preprint for Biohackathon 2023 project 15 "Enabling FAIR Digital Objects with RO-Crates, Signposting and Bioschemas"
beeware/briefcase
Tools to support converting a Python project into a standalone native application.
beeware/toga
A Python native, OS native GUI toolkit.
django-json-api/django-rest-framework-json-api
JSON:API support for Django REST framework
abrookins/django-prefect-example
An example of how to use Prefect 2.0 with Django
nextflow-io/nf-prov
lk-geimfari/mimesis
Mimesis is a robust data generator for Python that can produce a wide range of fake data in multiple languages.