Pinned Repositories
Field_Pathogenomics
FieldPathogenomics
FP_notebooks
A collection of Jupyter notebooks for doing analysis on the field pathogenomics project
GenomeAnnotation
marple
Pipeline for analysis of stem rust (Pgt) and yellow rust (Pst) reads for MARPLE
marple-pgt-paper
marple-pst
Pipeline for analysis of Puccinia striiformis f.sp. tritici genomic reads
pgt-pgs-markers
Identification of markers to distinguish Pgs from Pgt
PrimerDesign-nf
PrimerDesign Nextflow Pipeline
Rust_Expression_Browser
SaundersLab's Repositories
SaundersLab/FieldPathogenomics
SaundersLab/GenomeAnnotation
SaundersLab/marple
Pipeline for analysis of stem rust (Pgt) and yellow rust (Pst) reads for MARPLE
SaundersLab/marple-pst
Pipeline for analysis of Puccinia striiformis f.sp. tritici genomic reads
SaundersLab/bioluigi
Some useful shared tool for using luigi on the cluster and some tasks performing common bioinformatics stuff
SaundersLab/Field_Pathogenomics
SaundersLab/FP_notebooks
A collection of Jupyter notebooks for doing analysis on the field pathogenomics project
SaundersLab/marple-pgt
Pipeline for analysis of Puccinia graminis f. sp. tritici genomic reads
SaundersLab/marple-pgt-paper
SaundersLab/MARPLE_plant_pathogen_diagnostics
Scripts for realtime surveillance of plant pathogens using the MinION sequencer (Radhakrishnan et al.,)
SaundersLab/pgt-pgs-markers
Identification of markers to distinguish Pgs from Pgt
SaundersLab/PrimerDesign-nf
PrimerDesign Nextflow Pipeline
SaundersLab/PST
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis f. sp. tritici) on nextstrain.org
SaundersLab/pst130_annotation
SaundersLab/PSTGenome
SaundersLab/Rust_Expression_Browser
SaundersLab/WheatRust
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis) and Stem Rust (Puccinia graminis) on nextstrain.org