Pinned Repositories
bioluigi
Some useful shared tool for using luigi on the cluster and some tasks performing common bioinformatics stuff
FieldPathogenomics
GenomeAnnotation
marple-pgt
Pipeline for analysis of Puccinia graminis f. sp. tritici genomic reads
marple-pst
Pipeline for analysis of Puccinia striiformis f.sp. tritici genomic reads
MARPLE_plant_pathogen_diagnostics
Scripts for realtime surveillance of plant pathogens using the MinION sequencer (Radhakrishnan et al.,)
PST
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis f. sp. tritici) on nextstrain.org
pst130_annotation
PSTGenome
WheatRust
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis) and Stem Rust (Puccinia graminis) on nextstrain.org
SaundersLab's Repositories
SaundersLab/FieldPathogenomics
SaundersLab/GenomeAnnotation
SaundersLab/marple-pst
Pipeline for analysis of Puccinia striiformis f.sp. tritici genomic reads
SaundersLab/bioluigi
Some useful shared tool for using luigi on the cluster and some tasks performing common bioinformatics stuff
SaundersLab/marple
Pipeline for analysis of stem rust (Pgt) and yellow rust (Pst) reads for MARPLE
SaundersLab/marple-pgt
Pipeline for analysis of Puccinia graminis f. sp. tritici genomic reads
SaundersLab/MARPLE_plant_pathogen_diagnostics
Scripts for realtime surveillance of plant pathogens using the MinION sequencer (Radhakrishnan et al.,)
SaundersLab/PrimerDesign-nf
PrimerDesign Nextflow Pipeline
SaundersLab/PST
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis f. sp. tritici) on nextstrain.org
SaundersLab/pst130_annotation
SaundersLab/PSTGenome
SaundersLab/Rust_Expression_Browser
SaundersLab/WheatRust
Files for visualisation of the diversity of Wheat Yellow Rust (Puccinia striiformis) and Stem Rust (Puccinia graminis) on nextstrain.org
SaundersLab/Field_Pathogenomics
SaundersLab/FP_notebooks
A collection of Jupyter notebooks for doing analysis on the field pathogenomics project
SaundersLab/pgt-pgs-markers
Identification of markers to distinguish Pgs from Pgt