SchmollerLab/Cell_ACDC

Issues

• Error in function `gui_mouseReleaseEventImg1` v1.4.27

  #509 opened 2 months ago by Akankshazmaze
  10

• How to convert npz to COCO format

  #510 opened 2 months ago by ptlzon
  1

• Launch Cellpose GUI from Cell-ACDC GUI

  #508 opened 2 months ago by ElpadoCan
  0

• Allow selecting which columns to add from `acdc_output` to concatenated spotMAX files

  #507 opened 2 months ago by ElpadoCan
  0

• Expand label issues

  #506 opened 2 months ago by ElpadoCan
  0

• Expand shrink label in timelapse keeps wrong last object

  #504 opened 2 months ago by ElpadoCan
  0

• HTTP Error 500: INTERNAL SERVER ERROR when loading omnipose model

  #483 opened 3 months ago by ptlzon
  11

• Allow applying filters permanently gui

  #503 opened 3 months ago by ElpadoCan
  0

• Add points layer new id with left-click does not work

  #501 opened 3 months ago by ElpadoCan
  0

• Add points layer cursor only when add by clicking button is active

  #502 opened 3 months ago by ElpadoCan
  0

• Scrolling through frames with `Next` pressed causes slow-down in cell cycle analysis mode

  #475 opened 3 months ago by ElpadoCan
  1

• Add points by clicking new functionalities

  #500 opened 3 months ago by ElpadoCan
  0

• Switching plane not functional with 4D data

  #493 opened 3 months ago by ElpadoCan
  0

• Handle Spacing parameters for trackpy differently?

  #499 opened 3 months ago by Beno71
  1

• "Add points layer" function permanently changes mouse cursor

  #496 opened 3 months ago by Beno71
  1

• For 3D segm, draw ID on center of z-slice only if visible

  #498 opened 3 months ago by ElpadoCan
  0

• Improvement on how to handle IDs of first frame when tracking in the GUI

  #497 opened 3 months ago by ElpadoCan
  0

• Errors in `workers.trackingWorker` are not raised

  #495 opened 3 months ago by ElpadoCan
  0

• Add trackpy `search_radius` docstring

  #494 opened 3 months ago by ElpadoCan
  0

• Compute metrics utilities when z-slice was not selected in dataprep crashes

  #492 opened 3 months ago by ElpadoCan
  0

• Annotate lost objects in 4D only on visualized z-slice

  #491 opened 3 months ago by ElpadoCan
  0

• Improve handling of data-prep ROIs

  #489 opened 3 months ago by ElpadoCan
  3

• Cropping causes collapsed shape in ImageJ

  #490 opened 3 months ago by ElpadoCan
  1

• Line breaks are not present on add custom measurement messagebox

  #486 opened 3 months ago by ElpadoCan
  0

• Crop number of z-slices issues

  #487 opened 3 months ago by ElpadoCan
  0

• Docs terminal Screenshots not found

  #488 opened 3 months ago by ElpadoCan
  0

• [TEST]: test `load.loadData.isRecoveredAcdcDfPresent` and why autosave is saving same cca_df

  #485 opened 3 months ago by ElpadoCan
  0

• Error when using Gaussian filter in GUI

  #484 opened 4 months ago by ElpadoCan
  0

• Cannot add more than one click point to point layer

  #482 opened 4 months ago by ptlzon
  5

• unexpected keyword argument 'net_avg' error when loading cellpose model

  #481 opened 4 months ago by ptlzon
  5

• Error loading segment anything model running on CPU

  #480 opened 4 months ago by ptlzon
  2

• Background worker for integrity checking of cell cycle annotations

  #460 opened 4 months ago by ElpadoCan
  1

• Z-slices scrollbar never enabled after switching viewed plane

  #478 opened 4 months ago by ElpadoCan
  0

• When changing z-slice with object highlighted in 3D segmentation the object loses highlighting

  #479 opened 4 months ago by ElpadoCan
  0

• Prompt to restart acdc after installing tables

  #477 opened 4 months ago by ElpadoCan
  0

• Do not allow swapping mothers if division was annotated on wrong bud

  #476 opened 4 months ago by ElpadoCan
  0

• Saving acdc_output CSV file from tracker must convert boolean columns to integer

  #474 opened 5 months ago by ElpadoCan
  0

• Add a "Switch viewed plane" button besides z-slice scrollbar

  #473 opened 5 months ago by ElpadoCan
  0

• Show tree info does not seem to work

  #471 opened 5 months ago by ElpadoCan
  0

• CellACDC_normal_division_tracker lineage tree has funny values when saved

  #472 opened 5 months ago by Teranis
  0

• New cell cycle columns

  #470 opened 5 months ago by ElpadoCan
  0

• Probable error when adding a new object and going to next frame

  #467 opened 5 months ago by ElpadoCan
  0

• Cell cycle annotations edge case when swapping mother-buds pairs

  #469 opened 5 months ago by ElpadoCan
  0

• Cell_ACDC_normal_division tracker lost tracked IDs are not ignored

  #468 opened 5 months ago by ElpadoCan
  0

• Error when using Cellpose with two 3D channels

  #466 opened 5 months ago by ElpadoCan
  0

• Improve and add descriptions of variables in pomBseen and pomBseen nuclear

  #465 opened 5 months ago by Teranis
  0

• Visual annotations disappear when switching from viewer to segm and track on future non visited frame

  #462 opened 5 months ago by ElpadoCan
  2

• Initialise real time tracker only when switching to segm and track mode

  #463 opened 5 months ago by ElpadoCan
  0

• Do not ignore `ValueError` in `gui.guiWin.tracking`

  #464 opened 5 months ago by ElpadoCan
  0

• Real-time tracking in GUI should return a list of IDs where the reason why they are missing is known

  #461 opened 5 months ago by ElpadoCan
  0