SchmollerLab/Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
PythonBSD-3-Clause
Pinned issues
Issues
- 0
Switching planes with overlay on causes overlay to be active when going back to xy
#549 opened by ElpadoCan - 0
- 0
- 0
- 1
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Error when trying to edit scale bar properties
#542 opened by ElpadoCan - 0
Trackastra as real-time tracker
#541 opened by ElpadoCan - 0
Add trackastra tracker
#539 opened by ElpadoCan - 0
- 0
Fiji macros should save additional metadata
#536 opened by ElpadoCan - 0
Create data structure on macOS by automatic downloading Fiji.app and run macro headless
#520 opened by ElpadoCan - 0
- 0
Utility to resize images (up or downscale)
#533 opened by ElpadoCan - 2
Propagating deletion of cells causes errors
#538 opened by Teranis - 0
Skipping alignment in dataprep takes too long
#535 opened by ElpadoCan - 1
- 16
Could not install on macOS 10.14.6
#530 opened by jacobmhkim - 0
Add skip segmentation button to perform only tracking in segmentation module
#528 opened by ElpadoCan - 0
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Normal division tracker should ask to save annotations or not when re-tracking in GUI
#532 opened by ElpadoCan - 0
Allow saving and loading SAM embedding s
#527 opened by ElpadoCan - 0
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Drag timestamp and scale bar relative to click position
#522 opened by ElpadoCan - 0
Export to Video does not work when starting from frame that is not current one
#523 opened by ElpadoCan - 0
Timestamp is not removed
#521 opened by ElpadoCan - 0
New tracker tracking first groups and then objects relative to each other within groups
#519 opened by ElpadoCan - 0
Allow selecting which columns to add from `acdc_output` to concatenated spotMAX files
#507 opened by ElpadoCan - 0
Visualization bug manual background
#516 opened by ElpadoCan - 0
Export to video scrolling through z-slices
#517 opened by ElpadoCan - 0
Allow saving multiple crops in different folders
#515 opened by ElpadoCan - 0
Add timestamp
#513 opened by ElpadoCan - 0
Export to video
#514 opened by ElpadoCan - 14
- 1
Detect time points split into multiple files and recommend best course of action
#512 opened by ElpadoCan - 2
Error in opening folder for segmentation
#511 opened by NidhiChopdekar - 1
How to convert npz to COCO format
#510 opened by ptlzon - 0
Launch Cellpose GUI from Cell-ACDC GUI
#508 opened by ElpadoCan - 0
Expand label issues
#506 opened by ElpadoCan - 0
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Allow applying filters permanently gui
#503 opened by ElpadoCan - 0
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- 0
Add points by clicking new functionalities
#500 opened by ElpadoCan - 0
Switching plane not functional with 4D data
#493 opened by ElpadoCan - 1
Handle Spacing parameters for trackpy differently?
#499 opened by Beno71 - 1
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- 0
- 0
Errors in `workers.trackingWorker` are not raised
#495 opened by ElpadoCan - 0
Add trackpy `search_radius` docstring
#494 opened by ElpadoCan