SoapZA

Basel, Switzerland

Pinned Repositories

bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.7k 96 1.9k3.3k
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python717 25 1k5k
parasail
Pairwise Sequence Alignment Library
Language:C246 18 9634
macports-ports
The MacPorts ports tree
Language:Tcl1.6k 64 01.3k
edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Language:C++519 24 181167
bamtools
C++ API & command-line toolkit for working with BAM data
Language:C++420 27 160153
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Language:Cython797 47 932276
spoa
SIMD partial order alignment tool/library
Language:C++163 16 5133
AmpliconClipper
AmpliconClipper is an alignment postprocessor that removes PCR primers from SAM alignments and discards reads with major errors.
Language:C++3 2 12
macports-ports
The MacPorts ports tree
Language:Tcl0 0 00

SoapZA's Repositories

SoapZA/AmpliconClipper
AmpliconClipper is an alignment postprocessor that removes PCR primers from SAM alignments and discards reads with major errors.
Language:C++3 2 12
SoapZA/macports-ports
The MacPorts ports tree
Language:Tcl0 0 00