StuntsPT/Structure_threader

Issues

• multiple runs return identical likelihood

  #96 opened 3 months ago by andycrowl
  6

• plink .bed .bim .fam formatting problem

  #95 opened a year ago by alleneli
  3

• 'Module Not Found' Error running fastStructure

  #92 opened a year ago by quinn-ca
  6

• Error on running test data

  #94 opened a year ago by konopinski
  1

• Issue with seed_generator function when thread count is a multiple of replications

  #93 opened 2 years ago by heitor-mendonca
  7

• Add a "plot order changer" function to the program

  #91 opened 2 years ago by StuntsPT
  0

• Can this program generate Delta K diagram? After "job finished successfully", bestk folder only has two text files, evanno.txt and summary.txt....

  #90 opened 2 years ago by Maotingru
  1

• some problem with plotly

  #76 opened 3 years ago by mthon
  9

• problems running Structure_threader - Structure path problems with "c:\programfiles (x86)\..."

  #50 opened 3 years ago by Sparassus
  23

• ERROR running STRUCTURE in command line

  #86 opened 3 years ago by cahuparo
  2

• ERROR: moving to final location failed

  #89 opened 4 years ago by thesnakeguy
  10

• Investigate pip3 failing to install on Windows

  #88 opened 5 years ago by StuntsPT
  1

• Error running faststructure

  #87 opened 5 years ago by royfrancis
  11

• Structure_threader issue

  #84 opened 5 years ago by Ram-Nagar
  9

• structure_threader not using all available cores

  #85 opened 5 years ago by oospina
  3

• plot function error

  #83 opened 6 years ago by peuclide
  1

• Plotly. Font is deprecated

  #79 opened 6 years ago by 3nrique0
  3

• structurethreader not multithreading

  #81 opened 6 years ago by jkreinz
  1

• structure_threader with multiple --extra_opts not working

  #82 opened 6 years ago by oviscanadensis
  4

• *Structure_threader* is not parsing correctlly the results of STRUCTURE when there is a missing `extraparams` file

  #80 opened 6 years ago by StuntsPT
  1

• Numpy error during MavericK normalization

  #78 opened 7 years ago by cathynewman
  4

• Using the "plot" function with MavericK output is not working

  #77 opened 7 years ago by StuntsPT
  0

• structure_threader problem with seed

  #74 opened 7 years ago by StuntsPT
  5

• When using an indfile to sort the plots, the population numbers are sorted alphabeticaly, and not numericaly

  #75 opened 7 years ago by StuntsPT
  0

• Structure_threader does not check if the user has write permissions for the results dir

  #73 opened 7 years ago by StuntsPT
  0

• MavericK "outputLikelihood" should be merged

  #72 opened 8 years ago by StuntsPT
  0

• Improve field tests to try more parameter variations

  #61 opened 8 years ago by StuntsPT
  1

• Improve "BestK" presentation for MavericK

  #63 opened 8 years ago by StuntsPT
  1

• Improve plotting options

  #69 opened 8 years ago by StuntsPT
  0

• The comparative Qmatrix plot also appeares to have titles listed in reverse order

  #68 opened 8 years ago by StuntsPT
  0

• Problem wrapping MavericK when TI is turned off

  #66 opened 8 years ago by StuntsPT
  0

• Providing a list of values to the parameters "alpha" and "alphaPropSD" causes a failure.

  #67 opened 8 years ago by StuntsPT
  0

• Update the docs with new functionality

  #71 opened 8 years ago by StuntsPT
  0

• Provide an option to generate skeleton parameter files

  #70 opened 8 years ago by StuntsPT
  0

• Wrapping MavericK under windows fails

  #65 opened 8 years ago by StuntsPT
  0

• Structure_threader may be treating analyses like a black box

  #62 opened 8 years ago by StuntsPT
  1

• Reorganize and improve installation instructions

  #64 opened 8 years ago by StuntsPT
  0

• Problem with "plot prefix"

  #59 opened 8 years ago by StuntsPT
  0

• "faststructure" should be spelled with only lowecase in the "-f" plot option

  #57 opened 8 years ago by StuntsPT
  1

• K=1 is being plotted and Structure_threader throws an error

  #56 opened 8 years ago by StuntsPT
  0

• Population delimiters not showing with --use-ind-labels option

  #58 opened 8 years ago by ODiogoSilva
  0

• Link when wrapping fastStructure

  #53 opened 8 years ago by StuntsPT
  0

• Running Structure_threader without arguments triggers a crash. We don't want this.

  #54 opened 8 years ago by StuntsPT
  0

• Got this error today

  #55 opened 8 years ago by StuntsPT
  0

• *Structure_threader* fails if "extraparams" is not found

  #52 opened 8 years ago by StuntsPT
  0

• Plotly output filenames should have ".html" suffix

  #51 opened 8 years ago by StuntsPT
  0

• Use logging for terminal output

  #48 opened 8 years ago by ODiogoSilva
  0

• Using a popfile is not woring as expected

  #49 opened 8 years ago by StuntsPT
  0

• MavericK field test is silently broken.

  #46 opened 8 years ago by StuntsPT
  0

• Retrieve bestk at the end of the run

  #47 opened 8 years ago by ODiogoSilva
  0