SynBioDex/SBOLExplorer

Issues

• Sequence search query getting too long

  #117 opened 3 years ago by cjmyers
  1

• Use temporary file names to allow parallel search

  #116 opened 3 years ago by cjmyers
  1

• Parts in the SynBioHub Interlab collection not showing up

  #92 opened 3 years ago by cjmyers
  0

• Exception thrown during page rank

  #96 opened 3 years ago by cjmyers
  0

• Double entries in the results

  #82 opened 3 years ago by cjmyers
  0

• Start/end indexing messages

  #109 opened 3 years ago by cjmyers
  0

• Private sequences missing in index

  #113 opened 3 years ago by cjmyers
  0

• Move the sequences.fsa into the dumps directory

  #114 opened 3 years ago by cjmyers
  1

• Check for existence of sequences.fsa on start

  #115 opened 3 years ago by cjmyers
  1

• Return PageRank in sequence search

  #111 opened 3 years ago by yu-eric
  0

• Problems finding ModuleDefinitions

  #107 opened 3 years ago by Randoom97
  2

• Better logging

  #99 opened 4 years ago by cjmyers
  0

• Should catch errors due to virtuoso being non-responsive

  #98 opened 4 years ago by cjmyers
  0

• Should catch timeouts with Elasticsearch

  #97 opened 4 years ago by cjmyers
  0

• Problem due to elastic search being limited to 10000 results

  #93 opened 4 years ago by cjmyers
  2

• Indexing is not working for distributed search

  #91 opened 4 years ago by cjmyers
  5

• Problems with running on MacOS and Windows

  #88 opened 4 years ago by cjmyers
  0

• Add version number to config

  #86 opened 4 years ago by yu-eric
  0

• Add pagerank to collection

  #85 opened 4 years ago by yu-eric
  0

• Use page rank to sort sequence search results

  #73 opened 4 years ago by cjmyers
  1

• Support for keywords in search

  #74 opened 4 years ago by cjmyers
  0

• SBOLExplorer ceases working temporarily

  #39 opened 4 years ago by cjmyers
  3

• If the index is empty, return an error so SynBioHub knows to ask Virtuoso

  #20 opened 4 years ago by michael13162
  3

• Build index when no index is found

  #56 opened 4 years ago by cjmyers
  1

• Test that restarts in Docker are persisting state

  #21 opened 4 years ago by michael13162
  3

• Make Full Sequence Search JSON Available via API

  #61 opened 4 years ago by JMante1
  3

• Add weighting parameter to admin panel

  #28 opened 6 years ago by cjmyers
  1

• if part name is exact then should return the exact part

  #62 opened 4 years ago by JMante1
  1

• Switch from USearch to VSearch

  #48 opened 4 years ago by yu-eric
  7

• Must be str, not bytes?

  #26 opened 4 years ago by michael13162
  2

• Should be able to set the default graph URI to empty string

  #35 opened 4 years ago by cjmyers
  3

• Add instructions for running in a virtual environment

  #38 opened 4 years ago by cjmyers
  2

• Exception when no dumps file

  #53 opened 4 years ago by cjmyers
  2

• Error with SPARQL query to virtuoso

  #54 opened 4 years ago by cjmyers
  2

• Add a sequence based search page to SynBioHub

  #49 opened 4 years ago by cjmyers
  1

• Serious bug with distributed search

  #24 opened 5 years ago by cjmyers
  5

• Distributed search not robust to Web-of-Registries going down

  #27 opened 5 years ago by cjmyers
  2

• When no SBOLExplorer, change message to indicate that nothing is wrong

  #8 opened 5 years ago by michael13162
  3

• Problem with queries that include is member of collection

  #33 opened 5 years ago by cjmyers
  2

• Create a separate SBOLExplorer log file

  #23 opened 5 years ago by cjmyers
  4

• Defense comments

  #25 opened 5 years ago by michael13162
  0

• Search query causes a 502 error

  #29 opened 5 years ago by cjmyers
  1

• Included usearch differ in version

  #47 opened 5 years ago by yu-eric
  2

• Should use correct usearch for linux or osx

  #37 opened 5 years ago by cjmyers
  2

• Add index date/time status to SBH SBOLExplorer admin page

  #7 opened 5 years ago by cjmyers
  3

• Update database should be a button

  #34 opened 5 years ago by cjmyers
  1

• Divide by zero error during page rank

  #36 opened 5 years ago by cjmyers
  1

• Crash when updating index for empty repository

  #30 opened 6 years ago by cjmyers
  1

• .travis.yml file is in the wrong directory

  #12 opened 6 years ago by 3ach
  3

• FileNotFound error

  #9 opened 6 years ago by 3ach
  1