TBradley27
I am a research associate working within the Brenton Group at the Cancer Research UK Cambridge Institute
CRUK Cambridge InstituteCambridge, UK
TBradley27's Stars
htop-dev/htop
htop - an interactive process viewer
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
rocker-org/rocker
R configurations for Docker
marbl/CHM13
The complete sequence of a human genome
igvteam/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
lindenb/jvarkit
Java utilities for Bioinformatics
r-dbi/DBI
A database interface (DBI) definition for communication between R and RDBMSs
brentp/slivar
genetic variant expressions, annotation, and filtering for great good.
lindeloev/job
job: free Your RStudio Console
snakemake-workflows/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
TGAC/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
cmdcolin/oddgenes
A small database of weird gene annotations
lima1/PureCN
Copy number calling and variant classification using targeted short read sequencing
Illumina/Pisces
Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
s-andrews/BamQC
Mapped QC analysis program
shahcompbio/hmmcopy_utils
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
markowetzlab/Drews2022_CIN_Compendium
Main repository for Drews et al. (Nature, 2022)
epi2me-labs/wf-basecalling
asntech/QDNAseq.hg38
QDNAseq bin annotation for hg38
epi2me-labs/wf-somatic-variation
crukci-bioinformatics/rascal
R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.
sdchandra/tMAD
jennprk/diffsig
epi2me-labs/epi2me-labs.github.io
markowetzlab/CINSignatureDiscovery
Discovering copy number signatures from TCGA and new cohorts.
nrlab-CRUK/INVAR2
restructures version of invar
crukci-bioinformatics/ampliconseq
Variant calling pipeline for amplicon sequencing data
snakemake/snakemake-object
Language agnostic encoding of Snakemake job information as 'Snakemake objects' into Snakemake script preambles
crukci-bioinformatics/nf-alignment
Nextflow based alignment pipeline
grendar/CNHplus
Copy Number Heterogeneity which respects biological constraints