epi2me-labs/wf-basecalling

Issues

• cannot install epi2me in the cluster!?

  #48 opened a month ago by shankhanath
  4

• Increase the number of wf_dorado:dorado processes

  #51 opened 15 days ago by DustinSokolowski
  0

• trimming regression in dorado@v0.8.0

  #50 opened a month ago by istvankleijn
  1

• could not select driver with capabilities [[gpu]]

  #49 opened a month ago by Moos-7
  3

• 2 Run failed on same step - wf_dorado:align_and_qsFilter

  #47 opened 2 months ago by fidibidi
  2

• CUDA device requested but no devices found.

  #12 opened a year ago by SamStudio8
  9

• Problem running the pipeline on MacOS

  #45 opened 4 months ago by imerelli
  1

• Specify Dorado memory requirements

  #44 opened 4 months ago by mgperry
  2

• What arguments are accepted for demux_args?

  #41 opened 4 months ago by chris-krohn
  1

• `[error] Unknown argument: --kit-name` when combining --duplex with --barcode_kit SQK-NBD114-96

  #42 opened 4 months ago by chris-krohn
  1

• demultiplexing fails with CRAM

  #43 opened 4 months ago by istvankleijn
  2

• Switching revision to version prior to v1.1.9

  #39 opened 4 months ago by istvankleijn
  2

• How to set the --trim parameter in Dorado when running wf-basecalling

  #40 opened 4 months ago by CyberGypsy6324
  2

• Process `wf_dorado:dorado (7)` terminated with an error exit status (139)

  #38 opened 4 months ago by istvankleijn
  3

• ln: failed to create symbolic link 'OPTIONAL_FILE': File exists

  #35 opened 7 months ago by weishwu
  7

• report shows first chunk only

  #33 opened 5 months ago by istvankleijn
  2

• Workflow can't find minimap2 and/or seq_cache_populate.pl

  #37 opened 6 months ago by lucy924
  2

• Barcode demultiplexing

  #36 opened 6 months ago by danpal96
  1

• output files separately for each sample

  #14 opened a year ago by istvankleijn
  2

• Average Qscore

  #28 opened 7 months ago by valery-shap
  4

• Failed to create FASTQ output

  #31 opened 8 months ago by PavelSenkyrik
  2

• Process `cram_cache` terminated with an error exit status (255)

  #34 opened 8 months ago by LisaHagenau
  3

• duplex basecalling with modified bases

  #32 opened 9 months ago by istvankleijn
  1

• How to barcoding after basecalling?

  #29 opened 9 months ago by msubirana
  1

• Adapter trimming

  #30 opened 9 months ago by pawanchk
  5

• The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested

  #27 opened 10 months ago by mikeds211
  1

• docker container for the v0.4.3 release

  #24 opened a year ago by yuukiiwa
  2

• wf_dorado:dorado(1) error, command exit status 125

  #25 opened a year ago by c3305637
  1

• It got error when run in EPI2ME Labs

  #23 opened a year ago by piroonj
  1

• pulling update error

  #22 opened a year ago by BastianBrauer
  0

• Syntax for calling multiple mods at once

  #21 opened a year ago by annabel-NZ
  1

• Remora-cfg doesn't actually have all the configs that are linked in description.

  #20 opened a year ago by fidibidi
  0

• Dorado failed with exit status 125

  #18 opened a year ago by dixith-abhi
  3

• Error when using demo data option

  #19 opened a year ago by sachiwije
  3

• [Bug]: Not compatible with Azure batch executor

  #6 opened a year ago by benbfly
  8

• dorado_summary fails for fast5

  #17 opened a year ago by istvankleijn
  3

• [Bug]: Add support for duplex stereo basecalling

  #10 opened a year ago by mdemouth
  4

• dorado release timeline

  #13 opened a year ago by istvankleijn
  1

• bamstats taking forever

  #15 opened a year ago by istvankleijn
  6

• CUDA unknown error - Dorado 0.3.1

  #16 opened a year ago by Mathias-Boulanger
  3

• [Bug]: Having problems with: ERROR ~ Error executing process > 'wf_dorado:dorado (1)'

  #9 opened a year ago by MarioCazalla
  1

• [Bug]: params.output_bam = false not reflected in process `dorado` output block and script

  #11 opened a year ago by robinfchan
  5

• [Bug]: missing basecalling model?

  #8 opened a year ago by ChristopherRichie
  5

• [Question]: requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8)

  #7 opened a year ago by sklages
  2

• [Bug]: wf-basecalling samtools version is deprecated and segfaults please update to supported version

  #5 opened 2 years ago by mp15
  1

• [Bug]: alignment step is happening after the basecalling of the first chunk

  #4 opened 2 years ago by tkik
  3

• [Bug]: It's not possible to basecall without a reference.

  #1 opened 2 years ago by mattloose
  4

• [question]:

  #3 opened 2 years ago by neurogenetics1
  2

• [error]: you have entered an unknown model name.

  #2 opened 2 years ago by neurogenetics1
  5