TranslatorSRI/NodeNormalization

Issues

• is Tylenol no longer synonymized with acetaminophen/paracetamol?

  #259 opened 6 months ago by saramsey
  0

• Add a `/status` endpoint like we do for NameRes

  #257 opened 6 months ago by gaurav
  0

• Implement SetID endpoint

  #256 opened 7 months ago by cbizon
  0

• Add /1.5/ endpoint

  #254 opened 7 months ago by gaurav
  0

• After restoring from backup, the order of preferred CURIEs after drug conflation is incorrect

  #220 opened 8 months ago by gaurav
  4

• Fix issues with pushing to ITRB clusters

  #242 opened 9 months ago by gaurav
  4

• Propose to ITRB that we use rolling Serverless ElastiCache Redis

  #252 opened 9 months ago by gaurav
  0

• Osteopenia conflated with Marchiafava-Bignami disease

  #249 opened 10 months ago by amykglen
  0

• Improve error messages from NodeNorm

  #191 opened a year ago by gaurav
  0

• `semantic_types` key in curie_to_bl_type_db includes duplicates

  #235 opened a year ago by gaurav
  0

• Some low-priority fixes are needed to the translator-devops files for NodeNorm

  #240 opened a year ago by gaurav
  0

• support for LOINC curies

  #214 opened a year ago by gglusman
  1

• Add tracing with Jaegar

  #225 opened 10 months ago by gaurav
  2

• Add "preferred" identifiers to bulk download

  #187 opened 2 years ago by amykglen
  2

• Missing Information Content

  #182 opened 2 years ago by EvanDietzMorris
  2

• Update Redis backend

  #196 opened a year ago by gaurav
  2

• NCBIGene:6052 doesn't have a label, although it should

  #246 opened 10 months ago by gaurav
  0

• Categorized not arranged properly with `/query`

  #230 opened a year ago by gaurav
  0

• Provide evidence that NodeNorm can reliably support 20 sequential queries with a maximum of 10 seconds pause between each query (our current goal for performance in the short term)

  #219 opened a year ago by gaurav
  2

• Deprecate `/1.3/` endpoints

  #238 opened a year ago by gaurav
  0

• Rename `redis_connection0` etc. to something more readable

  #239 opened a year ago by gaurav
  0

• Update NodeNorm Jupyter Notebook and write some Translator-specific documentation

  #247 opened 10 months ago by gaurav
  0

• Remove information_content values from node_bindings in NodeNorm output

  #244 opened 10 months ago by gaurav
  0

• Replace redis-cli copy script with redis-cli download script

  #241 opened a year ago by gaurav
  0

• Reproducible error when using drug_chemical_conflate

  #221 opened a year ago by gaurav
  10

• Prevent errors in normalization from causing an entire batch to fail

  #222 opened a year ago by gaurav
  0

• Some variables in server.py don't appear to be used anywhere

  #236 opened a year ago by gaurav
  0

• Remove hardcoded TRAPI version

  #215 opened a year ago by gaurav
  0

• /query Removing analyses

  #229 opened a year ago by uhbrar
  1

• orphanet prefix case

  #209 opened a year ago by colleenXu
  1

• Restore partial load messages

  #192 opened a year ago by gaurav
  1

• Include mappings from Wikidata for use in a Triple Pattern Fragments app

  #217 opened a year ago by gaurav
  0

• Strategies for ensuring NodeNorm remains continuously useable for Translator

  #202 opened a year ago by gaurav
  1

• Add citation for NodeNorm as a CITATION.cff

  #181 opened 2 years ago by gaurav
  0

• Add benchmarking

  #205 opened a year ago by gaurav
  1

• Abrineurin split into multiple cliques

  #224 opened a year ago by gaurav
  1

• Type 2 diabetes conflated with coronary artery disease and other concepts

  #189 opened 2 years ago by amykglen
  1

• Incomplete normalization of 'abdomen'

  #188 opened a year ago by amykglen
  1

• Add provenance/EPC to NodeNorm

  #218 opened a year ago by gaurav
  0

• Upgrade `normalize_message` system to TRAPI 1.4

  #201 opened a year ago by gaurav
  1

• Add descriptions to NodeNorm

  #207 opened a year ago by gaurav
  1

• Aspirin clique split differently between NameRes and NodeNorm

  #210 opened a year ago by gaurav
  0

• Fix tests/test_callback.py

  #213 opened a year ago by gaurav
  1

• UMLS:C4715636 ("Enforcement of vehicle emissions standards") is not a biolink:PhenotypicFeature

  #206 opened a year ago by gaurav
  0

• Conflate Chirality? was: Two cliques for Coenzyme A

  #203 opened a year ago by amykglen
  3

• What proportion of NodeNorm concepts have information content values?

  #199 opened a year ago by gaurav
  3

• Request for Normalization of REACTOME Identifiers

  #198 opened a year ago by beasleyjonm
  1

• Certain 'PR:' curies throw "Error occurred during processing" on /get_normalized_nodes

  #179 opened 2 years ago by amykglen
  4

• Order of types incorrect

  #190 opened a year ago by cbizon
  2

• Bulk download of SRI NN data only contains Genes and Proteins?

  #185 opened 2 years ago by amykglen
  4