UCSC-LoweLab/tRAX

Issues

• isodecoder copy number

  #26 opened 6 months ago by dylansosa
  2

• Duplicate counting of reads

  #25 opened 7 months ago by conmeehan
  0

• dataframe used to do the differential expression analysis

  #24 opened 9 months ago by lilia0610
  1

• Calculation of percent misincorporation

  #23 opened 2 years ago by jchariker
  2

• Error at step3

  #21 opened 2 years ago by Leoyiosin
  1

• KeyError: 'rRNA' during processsamples.py

  #22 opened 2 years ago by abakirbas
  9

• Rat mitotRNAs

  #20 opened 3 years ago by sr8510
  1

• trimadapter.py Error

  #13 opened 3 years ago by ice4prince
  1

• Processsamples.py error

  #17 opened 3 years ago by sg4640
  4

• quickdb.bash

  #18 opened 3 years ago by ashafik1
  3

• rRNA reads classified as others

  #16 opened 3 years ago by Kec89
  3

• mapreads.py hard-codes # of cores to 1 for bowtie2?

  #15 opened 3 years ago by ribonucleo
  3

• Provide route to output non-tRNA reads and unmapped reads.

  #14 opened 3 years ago by ribonucleo
  2

• maketrnadb.py Issue

  #12 opened 3 years ago by ice4prince
  2

• Error while trimadapters.py in single-end mode

  #9 opened 3 years ago by PhKoch
  1

• maketrnadb error

  #6 opened 3 years ago by divyanandu
  1

• Error with processsamples.py

  #19 opened 3 years ago by lucacozzuto
  3

• Typo in processsamples.py#L516

  #10 opened 4 years ago by PhKoch
  1

• Python2 to Py3

  #11 opened 4 years ago by ice4prince
  1

• Weird error

  #8 opened 4 years ago by bm-153
  1

• Unable to align with bowtie2 - choosemappings.py error

  #7 opened 4 years ago by divyanandu
  1

• Poor mapping of Cozen data using pipeline

  #5 opened 4 years ago by emm13
  2

• Location of BAM files if already pre-mapped

  #4 opened 4 years ago by emm13
  2

• OS Error

  #3 opened 4 years ago by bm-153
  3

• IOError: [Errno 2] No such file or directory: 'TestTrnas/TestTrnas-SizeFactors.txt'

  #2 opened 4 years ago by windtalker6
  7

• maketrnadb.py error message

  #1 opened 4 years ago by bm153
  5