lucacozzuto

NGS data analysis Coordinator @ Bioinformatics Core Facility @CRG-CNAG

@CRG-CNAG Barcelona

Pinned Repositories

BioNextflow
A collection of modules and sub-workflows for Nextflow
Language:Nextflow26 8 84
ExOrthist
ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
Language:R21 6 334
indrop
Single cell transcriptome analysis pipeline based on DropEst
Language:Nextflow6 4 95
master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
Language:Nextflow93 9 11116
MOP2
Master of Pores 2
Language:Nextflow23 3 617
BioNextflow
Nextflow functions for biological tools
Language:Nextflow0 2 00
covid_CFR_estimator
Some useful stuff about covid19 pandemics
Language:R1 4 30
test_course
just a test
Language:Nextflow10

lucacozzuto's Repositories

lucacozzuto/covid_CFR_estimator
Some useful stuff about covid19 pandemics
Language:R1 4 30
lucacozzuto/awesome-nanopore
A curated list of awesome nanopore analysis tools.
1 0
lucacozzuto/awesome-nextflow
A curated list of nextflow based pipelines
1 0
lucacozzuto/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
lucacozzuto/economic_model
ABM model about Industrial revolution
Language:HTML2 1
lucacozzuto/elixir_NF
elixir_NF
Language:Nextflow3 0
lucacozzuto/err_nextflow
small repo for reproducing a nextflow error
1 0
lucacozzuto/INFN-ISS
infn
Language:R1 0
lucacozzuto/lpryszcz
1 0
lucacozzuto/lucacozzuto
2 01
lucacozzuto/make_new_project
Simple script for making a folder structure
Language:Shell2 0
lucacozzuto/Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
Language:HTML1 0
lucacozzuto/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow1 0
lucacozzuto/mulled
Mulled - Automatized Containerized Software Repository
0 0
lucacozzuto/multi-package-containers
Testing building mulled containers for multi-requirement tools.
1 0
lucacozzuto/PHIND_course_nextflow_Feb_2022
Nextflow course 2021
Language:Nextflow1 0
lucacozzuto/PHIND_course_nextflow_Feb_2022-1
CRG course about Nextflow and Linux containers
Language:Nextflow1 0
lucacozzuto/SEACR
SEACR: Sparse Enrichment Analysis for CUT&RUN
Language:Shell
lucacozzuto/shell_scripts
A bunch of shell scripts
Language:Shell2 0
lucacozzuto/test-datasets
Test data to be used for automated testing with the nf-core pipelines
lucacozzuto/test_4
Language:Nextflow
lucacozzuto/test_bookdown
github actions + bookdown
2 01
lucacozzuto/test_doc
Test doc
Language:Python1
lucacozzuto/test_nextflow
Language:Nextflow2 0
lucacozzuto/test_sphinx
Language:Python
lucacozzuto/training
Various Plone Trainings
Language:JavaScript1 0
lucacozzuto/tRAX
tRNA Analysis of eXpression
Language:Python0 0
lucacozzuto/tunisi_repo
test pipeline
Language:Nextflow
lucacozzuto/tutorial-template
Template for the Read the Docs tutorial
Language:Python1 0
lucacozzuto/website
Nextflow public web site
Language:HTML0 0