biocorecrg/MOP2

Issues

• Error executing process > 'TAILFINDR_ESTIMATE_TAIL:estimateTailSize (0)

  #64 opened a month ago by PraddyumnaR
  0

• MOP_MOD error: compore_polish_flow:NANOCOMPORE_SAMPLE_COMPARE:sampleCompare (mod vs wt)

  #63 opened 2 months ago by Iris-QAQ
  0

• MOP_MOD error msgs

  #62 opened 4 months ago by tzcoolman
  8

• docker image deprecation

  #61 opened 4 months ago by tutkuiince
  1

• Increasing number of assigned reads and poly(A) tail length estimation

  #60 opened 5 months ago by kethselly
  0

• nanopolish not executing

  #58 opened 6 months ago by tzcoolman
  7

• Determine Sample with Enriched Modification

  #53 opened 10 months ago by max-vdL
  2

• Pod5 support?

  #55 opened 6 months ago by bwlang
  1

• mop_preprocess problem

  #59 opened 6 months ago by ddioken
  5

• Error with Graphmap/samtools

  #48 opened 6 months ago by matjack2000
  1

• docker files usage

  #52 opened a year ago by oohas2000
  1

• mop_mod Nanocompore eventalign_collapse requires three threads, but uses only one by default. How to adjust tools_opt.tsv?

  #54 opened 8 months ago by miles-jon
  1

• Unable to execute guppy on a seemingly random fast5 file.

  #57 opened 6 months ago by joesimop
  1

• integrate yanocomp as another chemical modification detection approach

  #56 opened 8 months ago by adalisan
  0

• no output for Nanoconsensus

  #42 opened a year ago by jason2389
  5

• Using pre-trained models for modification prediction (MOP_mod)

  #51 opened a year ago by rugilemat
  5

• MOP preprocess issue: no descriptor found for reference

  #50 opened a year ago by rugilemat
  13

• "Error executing process > 'NANOPOLISH_VER:getVersion' " when running MOP_TAIL module

  #20 opened 2 years ago by rober136
  4

• Can't select genome instead of transcriptome

  #47 opened a year ago by melispyilmaz
  2

• Searching for RNA modifications (m6A, Y, m5C, etc).

  #34 opened 2 years ago by assetdaniyarov
  3

• CPU test run with singularity/apptainer issue

  #49 opened a year ago by kenneditodd
  7

• Guppy version

  #44 opened a year ago by AndreaYCT
  3

• mop_mod running time

  #33 opened 2 years ago by assetdaniyarov
  9

• I have no output for mop_preprocess in the files : alignement, counts, cram_files (the files are empty).

  #45 opened a year ago by matjack2000
  4

• Error executing process > 'compore_polish_flow:NANOPOLISH_EVENTALIGN:index (mod)'

  #37 opened a year ago by assetdaniyarov
  2

• Epinano workflow, how to get per-read results

  #39 opened 2 years ago by adalisan
  1

• deeplexicon final table in nextflow output

  #41 opened a year ago by lpryszcz
  4

• Error when running mop_mod

  #46 opened a year ago by AndreaYCT
  3

• how to set core and threads number manually

  #43 opened a year ago by PonderLi
  1

• version report for different tools

  #38 opened 2 years ago by GregorD96
  1

• Guppy parameter issue : --fast5_out

  #40 opened a year ago by ShawnSimp
  1

• Run mop_preprocess with Apple M1 chip

  #22 opened 2 years ago by chusopascual
  7

• epinano version 1.1 or 1.2

  #36 opened 2 years ago by adalisan
  1

• Problem with running mop_preprocess.nf

  #35 opened 2 years ago by assetdaniyarov
  1

• container with guppy installed

  #31 opened 2 years ago by adalisan
  1

• permission denied

  #32 opened 2 years ago by curtisba
  0

• Would like to install in M1chip Mac

  #30 opened 2 years ago by AndreaYCT
  21

• Preprocess with multiple Fast5 files?

  #29 opened 2 years ago by jayradke
  8

• Preprocess Exits at AssignReads

  #28 opened 2 years ago by jayradke
  1

• Inverted results in polya_common/fast5_pass_joined.txt

  #27 opened 2 years ago by YuancunZhao
  1

• Error executing testing script

  #26 opened 2 years ago by brooktila
  2

• conda singularity related error

  #25 opened 2 years ago by JBerthelier
  9

• Running mop_preprocess on MacbookPro/macOS Monterey

  #18 opened 2 years ago by anaesco
  1

• Docker issue

  #19 opened 2 years ago by rmoran7
  4

• Issue running preprocessing pipeline in MOP2

  #23 opened 2 years ago by luciabserra
  3

• INSTALL.sh update links

  #24 opened 2 years ago by gkanogiannis
  1

• Error executing process > 'preprocess_simple:NANOCOUNT:nanoCount (null)'

  #21 opened 2 years ago by chusopascual
  4

• compore_polish_flow:mean_per_pos terminates with error exit status 1

  #15 opened 2 years ago by peaceben
  9

• 'Failed to invoke `workflow.onComplete` event handler' in mop_preprocess

  #17 opened 2 years ago by rober136
  2

• RE: Reference sequences

  #14 opened 2 years ago by Malabady
  1