biocorecrg/MOP2

Using pre-trained models for modification prediction (MOP_mod)

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rugilemat commented

Hi all,

I was looking into the MOP_MOD workflows and from what I understand they are implementing Epinano, Nanopolish, Tombo and Nanocompore in KD/KO vs WT modes.

I know Epinano and tombo can use pre-trained models without the KO/KD condition (e.g. Epinano-SMV), I was wondering if there's a way to use that through MOP2 or if you have any plans to implement this in the future?

enovoa commented

Hi @rugilemat the implementation of Epinano in MoP2 corresponds to Epinano-Error, not Epinano-SVM. Pre-trained models can be used with Epinano-SVM if you use standalone Epinano, but not as part or MoP2. Thanks!

rugilemat commented

Hi @enovoa thanks! Do you have any plans to implement Epinano-SVM into MOP2 in the future?

enovoa commented

Not in the plans at the moment, sorry

rugilemat commented

I see, thanks!