UIUCSinhaLab/GEMSTAT

Issues

• Test that coop file and .par files agree on cooperativities.

  #47 opened 6 years ago
  0

• Create a tool to convert .par formats and free-fix format.

  #46 opened 6 years ago
  0

• Problem in Corr

  #45 opened 6 years ago
  1

• It was the ParFactory::load that was not creating enough/useful errors.

  #44 opened 6 years ago
  2

• Problem in coop parser (HALF_DIRECTIONAL)

  #43 opened 7 years ago
  0

• Default pars created by the ParFactory don't have interactions in new_storage branch.

  #42 opened 7 years ago
  0

• Fix return arguments in functions to use rvalue references.

  #41 opened 7 years ago
  1

• Additional Parameters

  #40 opened 7 years ago
  1

• Add scripts/submodules to get SGL/NLOpt, and an option to fetch/build/link statically.

  #38 opened 7 years ago
  1

• Recreate IND gemstat using new "Conditions" and ExprFunc class hierarchy, as an example.

  #37 opened 6 years ago
  1

• cooprativity file parser is insufficiently strict.

  #36 opened 7 years ago
  0

• No example factor_info.txt file.

  #35 opened 7 years ago
  0

• The usenlopt branch throws an error if a starting point has values outside the optimization bounds?

  #34 opened 8 years ago
  0

• Memory Leak

  #33 opened 8 years ago
  0

• Meaningless message if inputs incompatible with current model provided. (IE providing coop input for models where that is not needed.)

  #31 opened 8 years ago
  0

• No activators if no factor_info file provided.

  #30 opened 9 years ago
  2

• Incorrect sine-based infty_transform

  #29 opened 6 years ago
  0

• Bad exception handling in gradient_minimize .

  #28 opened 6 years ago
  1

• Fix mistake in which ExprPredictor.cpp was used in "designPatterns" branch.

  #25 opened 9 years ago
  0

• Carefully consider how const ExprPar& are used in ExprPredictor.cpp and INDExprPredictor.cpp, and how to fix that.

  #24 opened 9 years ago
  1

• In the master branch, somehow when the .par file is loaded, its factorThresholds are not loaded.

  #23 opened 9 years ago
  0

• pi parameter

  #22 opened 9 years ago
  1

• Not all command-line arguments are documented.

  #21 opened 9 years ago
  0

• The free_fix (indicator_bool) parser code is broken.

  #20 opened 9 years ago
  6

• -et option (default factor threshold) and Hassan's factor thr file are (effectively) ignored.

  #19 opened 9 years ago
  2

• If no factorinfo file is provided, assume all factors are activators? (Or throw an error.)

  #18 opened 9 years ago
  0

• Eliminate superfluous copying of Sequences and similar variables.

  #17 opened 9 years ago
  0

• The free_fix (indicator_bool) file is not in an order that makes sense to users.

  #15 opened 6 years ago
  1

• Read optimization bounds from another input file.

  #14 opened 7 years ago
  1

• Make Sequence objects know their own names, eliminate seqNames arrays anywhere they are used.

  #13 opened 9 years ago
  1

• Document that IND GEMSTAT is sensitive to TF order

  #12 opened 9 years ago
  0

• Eliminate the need to input true expression when making a predition only.

  #11 opened 9 years ago
  1

• Make ExprPredictor::optimize_beta obey both constraints on beta and free_fix

  #10 opened 9 years ago
  1

• IND Gemstat is sensitive to the order of TFs, (and who knows what else?)

  #9 opened 9 years ago
  2

• Fix the ExprPar::load function

  #7 opened 9 years ago
  2

• Remove need for cooperativity file. (put it into par.)

  #6 opened 9 years ago
  0

• Make the ExprPredictor objective functions a Strategy pattern.

  #5 opened 6 years ago
  1

• Need unit/regression tests.

  #4 opened 9 years ago
  0

• Things that should be instance variables are static.

  #3 opened 9 years ago
  2

• Copious IO inlined in main fuction.

  #2 opened 9 years ago
  1

• Prediction Scaling

  #1 opened 9 years ago
  0