fitNullModel doesn't converge when provided a list of matrices with more than 1 matrix
Opened this issue · 3 comments
fitNullModel doesn't converge when provided a list of matrices with more than 1 matrix. We tried providing one matrix, and it was fine, we tried providing a list of a single matrix, and it was fine (converged). It seems like there is an issue with more than one matrix. I haven't looked at the code.
We have a unit test for multiple matrices, so it does run with a trivial example. Unfortunately that means the issue is more difficult to solve since it's related to the specifics of the data.
Hmmm. The fitNullModel function did work using an earlier version of GENESIS, so I don't think this is the data. Could it be related to the type of outcome? we looked at it today with a binary outcome (family = "binomial").
Do you have a log you can share? It certainly has worked with multiple matrices in the past, and I don't think we've made any changes that would have affected this.