ValeroGracia

ValeroGracia's Stars

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python75636483186

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python70127900188

• gpertea/gffread

  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

  Language:C++373913239

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl3612280681

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C33176018

• jtlovell/GENESPACE

  Language:R190716827

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl13010344

• EVidenceModeler/EVidenceModeler

  source code for EVM

  Language:Perl10249720

• gatech-genemark/ProtHint

  Protein hint generation pipeline for gene finding in eukaryotic genomes

  Language:Python5645213

• ForBioPhylogenomics/tutorials

  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

  Language:Ruby301213

• BioinformaticsToolsmith/Red

  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

  Language:C++15448

• NBISweden/workshop-genome_annotation

  This is the NBIS repository for the Genome Annotation Workshop.

  94403

• ebp-nor/genome-assembly-workshop-2023

  6004

• gatech-genemark/EukSpecies-BRAKER2

  Repository with data of eukaryotic species used in BRAKER2 experiments

  Language:Perl3301

• ebp-nor/workshop-2024

  Language:HTML200