XiaoTaoWang/NeoLoopFinder

Issues

• Error occurred when Plotting Genes

  #68 opened 5 months ago by ZJU-Plumber
  0

• Can neoloopfinder applied to mitosis cells?

  #67 opened 6 months ago by Xieeeee
  1

• Pickle has an incompatible dtype

  #66 opened 8 months ago by AudreyBaguette
  1

• genome

  #64 opened 8 months ago by wangzhaohui-001
  1

• segment-cnv and plot-cnv issue

  #65 opened 8 months ago by BERICP01
  0

• ploidy parameters and biological replicates choose for Down Syndrome

  #63 opened 10 months ago by linfanxiao
  2

• The KeyError: 'weight'

  #62 opened a year ago by biosciences
  1

• Getting a bug while running vis.plot_genes()

  #61 opened a year ago by walidabualafia
  1

• problems in pyensembl_download_cache

  #60 opened a year ago by ecesukilinc
  0

• the removal of background signals in the plot?

  #58 opened a year ago by xunchen85
  0

• genes overlapping in visualization

  #59 opened a year ago by ninashenker
  2

• neoloop-caller running error

  #57 opened a year ago by xunchen85
  1

• what 's the version of pomegranate?

  #56 opened a year ago by HanwenZhu98
  1

• segment-cnv error

  #55 opened a year ago by abhijitcbio
  2

• How to plot region not in assembly

  #54 opened 2 years ago by Josephinedh
  2

• juicer v2 .hic file as the input?

  #51 opened 2 years ago by xunchen85
  1

• Labels overlap with filter

  #53 opened 2 years ago by iagooteroc
  0

• Can I use NeoLoopFinder for other organisms?

  #52 opened 2 years ago by xinghua1001
  1

• NeoLoopFinder for Micro-C

  #46 opened 2 years ago by PinpinSui
  4

• Log2 Copy Number

  #50 opened 2 years ago by Xieeeee
  2

• segment-cnv terminated without notice and results.

  #47 opened 2 years ago by Xieeeee
  4

• Missed assembled translocations in smaller bins

  #49 opened 2 years ago by xunchen85
  3

• Can we use it with a customized reference genome

  #48 opened 2 years ago by xunchen85
  4

• Numpy.int AttributeError

  #45 opened 2 years ago by TeoSakel
  1

• neoloop-caller IndexError

  #43 opened 2 years ago by zzhoujialu
  6

• Python version in installation commands

  #44 opened 2 years ago by kuba11
  2

• Invalid interval bounds with chr prefix already

  #42 opened 2 years ago by zzhoujialu
  2

• Number of Redundant Candidates in assemble-complexSVs

  #41 opened 2 years ago by alobo4
  4

• visualization of CNV normalization in higlass

  #33 opened 2 years ago by LuJiansen
  3

• neoloop-caller error

  #40 opened 2 years ago by ldyyzhangh
  2

• Color of interaction matrix

  #39 opened 2 years ago by stanleyrc
  2

• download pre-trained Peakachu models

  #34 opened 2 years ago by Bo-UT
  8

• neoloop-caller has some error

  #35 opened 2 years ago by yangfeizZZ
  2

• neoloop-caller failed

  #36 opened 2 years ago by yangfeizZZ
  3

• generating figure has error

  #38 opened 2 years ago by yangfeizZZ
  0

• The output of neoloop-caller is empty

  #37 opened 2 years ago by yangfeizZZ
  0

• Triangle fails to plot some off-diagonal contacts

  #32 opened 3 years ago by auberginekenobi
  3

• Neoloopfinder doesn't find loops and assemblies that I think it should

  #31 opened 3 years ago by auberginekenobi
  1

• How to output the Regular loop and Tads without SVs

  #22 opened 3 years ago by wzhang42
  4

• How do I handle cool files

  #23 opened 3 years ago by shidetong
  1

• calculate-cnv runtime error

  #27 opened 3 years ago by katreya42
  4

• assemble-complexSVs "Called 0 connected assemblies"

  #30 opened 3 years ago by DittmanC
  1

• CNV adjustment

  #26 opened 3 years ago by DittmanC
  2

• Custom enzyme list

  #24 opened 3 years ago by mt96stanley
  3

• compatibility with hiChIP data

  #28 opened 3 years ago by SplitInf
  2

• Run segment-cnv with KeyError: 0

  #29 opened 3 years ago by jxulab
  6

• UnboundLocalError: local variable 'pool' referenced before assignment

  #25 opened 3 years ago by DittmanC
  2

• result in error running assemble-complexSVs

  #21 opened 3 years ago by zhangli271828
  0

• Generating the genome wide loops

  #20 opened 3 years ago by wt2855918
  0

• input with mouse cells

  #19 opened 3 years ago by skytguuu
  4