Xieeeee

Yang Xie | Single cell epigenomics | Bing Ren lab | UCSD BMS 2018 | Fudan Biology 2014 🥃

UC San DiegoSan Diego, CA

Pinned Repositories

scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Language:Jupyter Notebook206 10 37139
SnapATAC2
Single-cell epigenomics analysis tools
Language:Python247 8 31631
NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
Language:Python62 1 7016
AlleliC
Allelic mapping for Hi-C
Language:Python1 1 00
bioinfo_bootcamp
Language:Jupyter Notebook0 1 00
Droplet-Hi-C
🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
Language:Jupyter Notebook8 1 73
Droplet-Paired-Tag
☕️ This repository contains protocol and code to reproduce the results for Droplet Paired-Tag manuscript
Language:Jupyter Notebook6 2 30
Paired-Tag
Analysis of Paired-Tag datasets
Language:C++1 0 01
Xieeeee.github.io
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scHiCluster
Language:Python63 4 1818

Xieeeee/Droplet-Hi-C
🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
Language:Jupyter Notebook8 1 73
Xieeeee/Droplet-Paired-Tag
☕️ This repository contains protocol and code to reproduce the results for Droplet Paired-Tag manuscript
Language:Jupyter Notebook6 2 30
Xieeeee/AlleliC
Allelic mapping for Hi-C
Language:Python1 1 00
Xieeeee/Paired-Tag
Analysis of Paired-Tag datasets
Language:C++1 0 01
Xieeeee/bioinfo_bootcamp
Language:Jupyter Notebook0 1 00
Xieeeee/Xieeeee.github.io
Language:HTML0 1 00