YY-SONG0718

YY-SONG0718's Stars

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python199k5.9k1.6k46.4k

• pyg-team/pytorch_geometric

  Graph Neural Network Library for PyTorch

  Language:Python22k2543.6k3.8k

• mlc-ai/web-llm

  High-performance In-browser LLM Inference Engine

  Language:TypeScript15k133343977

• marp-team/marp

  The entrance repository of Markdown presentation ecosystem

  Language:TypeScript8.5k710164

• gordicaleksa/pytorch-GAT

  My implementation of the original GAT paper (Veličković et al.). I've additionally included the playground.py file for visualizing the Cora dataset, GAT embeddings, an attention mechanism, and entropy histograms. I've supported both Cora (transductive) and PPI (inductive) examples!

  Language:Jupyter Notebook2.5k4714334

• rmcelreath/stat_rethinking_2023

  Statistical Rethinking Course for Jan-Mar 2023

  Language:R2.3k15015256

• Project-MONAI/tutorials

  MONAI Tutorials

  Language:Jupyter Notebook2k35674715

• snap-stanford/GraphGym

  Platform for designing and evaluating Graph Neural Networks (GNN)

  Language:Python1.8k2249186

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.4k26456162

• acbull/pyHGT

  Code for "Heterogeneous Graph Transformer" (WWW'20), which is based on pytorch_geometric

  Language:Python8171354163

• matloff/TidyverseSkeptic

  An opinionated view of the Tidyverse "dialect" of the R language.

  Language:TeX534383447

• openproblems-bio/openproblems

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Shell331818982

• biocypher/biocypher

  A unifying framework for biomedical research knowledge graphs

  Language:Python245833532

• YuLab-SMU/enrichplot

  Visualization of Functional Enrichment Result

  Language:R2401123170

• pachterlab/seqspec

  machine-readable file format for genomic library sequence and structure

  Language:Python11972917

• theislab/chemCPA

  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

  Language:Jupyter Notebook111310326

• tanaylab/metacells

  Metacells - Single-cell RNA Sequencing Analysis

  Language:Python1035728

• stephenslab/fastTopics

  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

  Language:R795539

• kamperh/lecture_dtw_notebook

  Language:Jupyter Notebook764229

• nicolaroberts/hdp

  R pkg for Hierarchical Dirichlet Process

  Language:R748631

• Teichlab/MultiMAP

  MultiMAP for integration of single cell multi-omics

  Language:Python5581113

• mariarizzo/energy

  energy package for R

  Language:R45587

• Lotfollahi-lab/nichecompass

  End-to-end analysis of spatial multi-omics data

  Language:Python414217

• ayushnoori/metapaths

  Similarity search in heterogeneous knowledge graphs using meta paths.

  Language:R24413

• davidbuterez/CellVGAE

  An unsupervised scRNA-seq analysis workflow with graph attention networks

  Language:Jupyter Notebook24428

• mskilab-org/nf-jabba

  Language:R13123

• biocypher/project-template

  Template for creating a BioCypher-driven knowledge graph

  Language:Python12117

• QijinYin/scGraph

  Language:Python11347

• earlham-sherlock/earlham-sherlock.github.io

  an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data

  Language:Python10501

• Papatheodorou-Group/scGOclust

  Gene ontology terms to compare single cell RNA-seq data

  Language:R9140