YoannPa/methview.qc

Issues

• Validate HM450K QC data with WGBS data to better define the reference for QC fluorescence intensity

  #11 opened 2 years ago by YoannPa
  0

• Legends of devscore.heatmap() are not left aligned to each other

  #16 opened 3 years ago by AnjaCaRa
  3

• sampleQC.biplot() - Error in [.data.table(loadings.data, , :=(2:3, lapply(X = data.table::.SD, :

  #15 opened 3 years ago by AnjaCaRa
  1

• devscore.heatmap() - Error in unique.default(x, nmax = nmax) : unique() applies only to vectors

  #14 opened 3 years ago by AnjaCaRa
  1

• plot.all.qc() - Error in unique.default(x, nmax = nmax)

  #13 opened 3 years ago by AnjaCaRa
  4

• Legends of snp.heatmap() are not left aligned to each other

  #12 opened 3 years ago by AnjaCaRa
  3

• Overlap annotation legends snp.heatmap()

  #9 opened 3 years ago by AnjaCaRa
  6

• plot.all.qc(include.gp = TRUE) - display issue with legends and sample labels.

  #6 opened 3 years ago by AnjaCaRa
  8

• Group label size snp.heatmap() - annotation labels overlap

  #8 opened 3 years ago by AnjaCaRa
  3

• QC summary by sample

  #2 opened 3 years ago by AnjaCaRa
  2

• snp.heatmap() - scale color bar title shows "Methylation" when it should be allelic version of SNPs

  #10 opened 3 years ago by AnjaCaRa
  2

• plot.all.qc(include.gp = TRUE) - add documentation details about snp.heatmap() to custom genotyping probe heatmap

  #7 opened 3 years ago by AnjaCaRa
  1

• sampleQC.biplot() PCA function error

  #3 opened 3 years ago by AnjaCaRa
  3

• Error for plot.all.qc() function after update

  #1 opened 3 years ago by AnjaCaRa
  0

• target.biplot() error

  #4 opened 3 years ago by AnjaCaRa
  1

• snp.heatmap() function error

  #5 opened 3 years ago by AnjaCaRa
  1