Add wrapper for scran
Closed this issue · 4 comments
drisso commented
Add wrapper for scran
mbcole commented
Must re-introduce @ckmah 's wrapper with additional automation / modified argument interface
ckmah commented
There is a case where the internal clustering step quickCluster
may break if there are too few cells (less than default minimum threshold of 200). Similarly computeSumFactors
has a minimum threshold of some sort as well. @mbcole If this isn't too urgent I would be happy to investigate.