ZCLIU-2022

ZCLIU-2022's Stars

• labmlai/annotated_deep_learning_paper_implementations

  🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

  Language:Python57.6k4611325.9k

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook15.3k1124181.4k

• diff-usion/Awesome-Diffusion-Models

  A collection of resources and papers on Diffusion Models

  Language:HTML11.3k26849952

• cs230-stanford/cs230-code-examples

  Code examples in pyTorch and Tensorflow for CS230

  Language:Python4k6419998

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.3k24823994

• inkscape/inkscape

  Project Website: https://inkscape.org - Code Repository: https://gitlab.com/inkscape/inkscape - Draw freely. 🖌

  2.3k820184

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k18241620

• x-dr/tts

  微软azure文本转语音 音频下载

  Language:HTML42058100

• scanberg/viamd

  Visual Interactive Analysis of Molecular Dynamics

  Language:C++278116328

• BioinfoMachineLearning/bio-diffusion

  A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)

  Language:Python18441024

• zaixizhang/PocketGen

  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets

  Language:Python1441913

• cgohlke/pymol-open-source-wheels

  Pymol-open-source wheels for Python on Windows

  Language:Python87408

• KevinOfCathay/DDPM-demo

  pytorch ddpm demo

  Language:Python77124

• rli012/GDCRNATools

  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC

  Language:R6762142

• callumjd/AMBER-Membrane_protein_tutorial

  Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen

  Language:Python551916

• bigginlab/ABFE_workflow

  This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.

  Language:Python4532017

• mindrank-ai/PharmaBench

  Language:Jupyter Notebook26402

• sambitmishra0628/siRNA_activity_prediction

  Predicting siRNA activity with machine learning

  Language:Jupyter Notebook24168

• anazhmetdin/siRNAdesigner

  python script that picks suitable targets for siRNA with off-target optimization

  Language:Python15106

• BioinfoMachineLearning/GCDM-SBDD

  A geometry-complete diffusion generative model (GCDM) for structure-based drug design (Nature CommsChem)

  Language:Python9332

• tacazares/SeedMatchR

  Off-target analysis of siRNA knock down paired with RNAseq

  Language:R7133

• BleekerLab/small-rna-seq-pipeline

  A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data

  Language:Python62102

• dmcgoldrick/17-antiviral-COVID19-siRNA

  An RNAi pipeline is applied to the genome of SARS like corona virus (SARS-CoV-2) which causes COVID-19 yielding 17 candidate siRNA sequences for nebulization tests hitting 9 distinct loci over the genome of the virus.

  Language:Jupyter Notebook6321

• Linnas/RNAi-designer

  GUI toolkit for siRNA design.

  Language:Python65

• ZachariasLab/GoCa

  Generate simulation files for structure-based coarse-grained protein models.

  Language:C++5050

• csbarak/MolOpt_Students_2023

  Language:JavaScript417

• ianvcaldas/smalldisco

  Discovery of siRNA regions and small RNA tail quantification

  Language:Python4332

• otaviolsantana/solvate

  Solvate Suite 2024.10 (Bleeding Edge)

  Language:Shell415

• tingpeng17/TEC-miTarget

  Language:Python20

• GitGears/AR

  androgen receptor project

  Language:Jupyter Notebook11