ZJUFanLab
single-cell omics; spatial transcriptomics; TCM network biology
Zhejiang UniversityHangzhou, China
Pinned Repositories
bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
scCATCH_performance_comparison
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
scCube
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
scRank
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
scSpace
an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
ZJUFanLab's Repositories
ZJUFanLab/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
ZJUFanLab/bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
ZJUFanLab/scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
ZJUFanLab/SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
ZJUFanLab/CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
ZJUFanLab/scRank
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
ZJUFanLab/scSpace
an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
ZJUFanLab/scCATCH_performance_comparison
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
ZJUFanLab/scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
ZJUFanLab/CCL-cGPS
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
ZJUFanLab/KANO
Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
ZJUFanLab/scCube
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
ZJUFanLab/SpaTrio
ZJUFanLab/SCOTCH
SCOTCH is a Single-Cell multi-modal integration method leveraging the Optimal Transport algorithm and a cell matCHing strategy
ZJUFanLab/scDeepTalk
Infer cell-cell communications based on feed-forward neural network
ZJUFanLab/scTITANS
Identifying key genes and cell subclusters for time-series single cell sequencing data
ZJUFanLab/scDisProcema
ZJUFanLab/SAMBA
ZJUFanLab/scCrossTalk
Infer cell-cell communications based on CellTalkDB
ZJUFanLab/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
ZJUFanLab/PerturbMerge
ZJUFanLab/PerturbMeta
ZJUFanLab/PerturbScore
ZJUFanLab/SIMO