ZJUFanLab/scCATCH

Issues

• Error in apply(ndata2, 1, mean) : dim(X) must have a positive length

  #63 opened 2 years ago by Namuhan33
  1

• install error

  #67 opened 7 months ago by q1134269149
  0

• Error when using custom marker dataframe

  #66 opened 10 months ago by niccolovono
  1

• Cell type annotation for more than 3 subtypes

  #65 opened a year ago by gkc251
  0

• CellMatch reference database version

  #64 opened a year ago by februaryfang
  0

• Inconsistent logFC calculation method

  #62 opened 2 years ago by februaryfang
  1

• no 'first' column in clu_ann

  #61 opened 2 years ago by februaryfang
  1

• An error appeared when running findmarkergene()

  #60 opened 2 years ago by ZhengYingqi-doctor
  1

• error from rev_gene function

  #59 opened 2 years ago by februaryfang
  1

• scCATCH and Seurat

  #58 opened 2 years ago by cathalgking
  8

• cluster cell match

  #56 opened 2 years ago by antoine4ucsd
  2

• no method for coercing this S4 class to a vector

  #57 opened 2 years ago by Elena983
  2

• No matched potential marker genes in the matrix!

  #55 opened 2 years ago by Elena983
  9

• Issue: could not find function "scCATCH"

  #54 opened 2 years ago by RYY0722
  1

• Nasal epithelium: not matched with the tissue types in CellMatch database

  #53 opened 2 years ago by olgabaranov
  1

• 更新版本后不能使用原来的Seurat格式的数据了吗

  #51 opened 2 years ago by cherryamme
  1

• Can I work with seurat function FindAllMarkers

  #52 opened 2 years ago by yugacandy
  1

• cluster_data format

  #50 opened 3 years ago by xiaoxiaofuyou
  2

• Error when using findmarkergenes function

  #46 opened 3 years ago by ivy-yuan
  4

• Cholmod error 'problem too large'

  #45 opened 3 years ago by oldedios
  1

• An error for scCATCH

  #47 opened 3 years ago by KaWingLee9
  2

• Problem with functions findmarkergenes and scCATCH

  #48 opened 3 years ago by celineyayifeng
  2

• ERROR : unable to find an inherited method for function ‘findmarkergene’ for signature ‘"Seurat"’

  #49 opened 3 years ago by levinhein
  3

• Could not find function

  #44 opened 3 years ago by VNa24
  4

• Issue in findmarkergene function

  #33 opened 3 years ago by s-yadav21
  5

• How to download all cell markers in a certain tissue embbed in this package?

  #43 opened 3 years ago by JiahuaQu
  2

• Warning: there are only 5 potential marker genes in CellMatch database for Mouse on Skin!

  #42 opened 3 years ago by Tommaso12
  2

• Tissue choice

  #41 opened 3 years ago by lwtan90
  1

• All the same cell type when using scCATCH on Seurat FindAllMarkers

  #39 opened 3 years ago by darlene003
  1

• Interested in combining cancer and non-cancer

  #38 opened 3 years ago by SimoniMD
  1

• Creating UMAP and PCA Plots after Cluster Annotation and Marker Identification

  #37 opened 3 years ago by phoebe460
  1

• Cancer tissues for mouse

  #36 opened 3 years ago by olgabaranov
  1

• new markers added to cellMatch or scCATCH

  #31 opened 3 years ago by Jasonliu21
  1

• only 5 potential marker genes in CellMatch database for Mouse on Skin

  #40 opened 3 years ago by Tommaso12
  2

• How to deal with spatial data

  #29 opened 3 years ago by ElyasMo
  2

• Error in scCATCH

  #35 opened 3 years ago by m3lorra
  1

• Error in rep(clu_num[i], (length(clu_num) - 1)) : invalid 'times' argument

  #34 opened 3 years ago by mbartl13
  1

• Error in genedata1$Var1 : $ operator is invalid for atomic vectors

  #32 opened 4 years ago by wolf5996
  3

• Loosing a large number of genes when running findmarkergenes

  #30 opened 4 years ago by nasiegel88
  2

• SCTransform compatibility with scCATCH

  #28 opened 4 years ago by bounlu
  3

• scCATCH changed my seurat cluster ID

  #27 opened 4 years ago by skyfall-lyc
  1

• scCATCH with Spatial data

  #26 opened 4 years ago by raman91
  1

• cancer type的参数设置问题

  #24 opened 4 years ago by lxwang326
  2

• object not interpretable as a factor

  #25 opened 4 years ago by lxwang326
  2

• Cluster with multiple cell types

  #23 opened 4 years ago by lvweiming
  2

• cell type identification

  #22 opened 4 years ago by lvweiming
  3

• CellMatch database updates

  #21 opened 4 years ago by nasiegel88
  3

• findmarkergenes and cancer argument

  #20 opened 4 years ago by c1au6i0
  2

• cannot install scCATCH

  #18 opened 5 years ago by skim245
  25

• Invalid times argument

  #19 opened 4 years ago by hayfre
  2