ZJUFanLab/scCATCH

Could not find function

VNa24 opened this issue · 4 comments

VNa24 commented

I have installed scCATCH package and run the following code.

library(scCATCH)
Markers <- findmarkergenes(combined,
species = "Mouse",
cluster = 'All',
match_CellMatch = FALSE,
cancer = NULL,
tissue = "Skin",
cell_min_pct = 0.25,
logfc = 0.25,
pvalue = 0.05)

But it's showing the following error:
Error in findmarkergenes(combined, species = "Mouse", cluster = "All", :
could not find function "findmarkergenes"

I have run scCATCH analyses before and have never encountered this problem. Could anyone assist me with this issue, please?

xiaoxiaofuyou commented

Please refer to https://raw.githack.com/ZJUFanLab/scCATCH/master/vignettes/tutorial.html
Thank you. But why i can't open this address? like this
image
I have tried Google brower and Microsoft brower.

xiaoxiaofuyou commented

Because I had the same problem today, saying i can't find this function——'findmarkergenes', I would appreciate it very much if you can answer my question.

multitalk commented

Hello, scCATCH v3.0 have two functions, namely findmarkergene() and findcelltype() replacing the functions of findmarkergenes() and scCATCH() in the previous version, respectively. Given the tutorial.html, you can download the file from the https://github.com/ZJUFanLab/scCATCH/blob/master/vignettes/tutorial.html and open it in your own browser locally.