ZhangMH2000

ZhangMH2000's Stars

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript2.9k333.2k92

• deroneriksson/python-wsi-preprocessing

  Python Whole Slide Image Preprocessing

  Language:Python27310491

• genialis/RNAnorm

  Normalization of RNA-seq gene expression

  Language:Python77111316

• sjdlabgroup/SAHMI

  Language:R7422516

• ruppinlab/PERCEPTION

  Utilizing single-cell omics from patients tumor to predict response and resistance.

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• FredHutch/Galeano-Nino-Bullman-Intratumoral-Microbiota_2022

  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022

  Language:Python3552310

• fuscc-deep-path/sc_MTOP

  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosystem diversity at the single-cell level. This code provide 1) Hover-Net-based nuclear segmentation and classification; 2) Nuclear morphological and texture feature extraction; 3) Multi-level pairwise nuclear graph construction and spatial topological feature extraction.

  Language:Python283116

• knightlab-analyses/mycobiome

  Pan-cancer mycobiome atlas

  Language:Jupyter Notebook232315

• zonechen1994/AI_TLS_segmentation

  Language:Python23133

• SamGa3/microbiome_reconstruction

  Language:R14162

• abdohlman/tcma_code

  Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.

  Language:Python12418

• twbattaglia/tumor-microbiome

  A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)

  Language:R10101

• labsyspharm/scn2ometiff

  Convert a Leica .SCN file to OME-TIFF format

  Language:Python230