ZhaohanM

ZhaohanM's Stars

• DeepGraphLearning/AStarNet

  Official implementation of A* Networks

  Language:Python13315

• zjukg/KG-MM-Survey

  Knowledge Graphs Meet Multi-Modal Learning: A Comprehensive Survey

  29114

• tatonetti-lab/sex_risks

  Investigating drugs with sex specific risks of adverse drug reactions

  Language:Jupyter Notebook64

• zjukg/KG-LLM-Papers

  [Paper List] Papers integrating knowledge graphs (KGs) and large language models (LLMs)

  1.4k102

• mims-harvard/decagon

  Graph convolutional neural network for multirelational link prediction

  Language:Jupyter Notebook447141

• cambridgeltl/mop

  Codes for paper: Mixture-of-Partitions: Infusing Large Biomedical Knowledge Graphs into BERT

  Language:Python292

• ZhaohanM/FusionGDA

  we propose a novel FusionGDA model, which utilises a pre-training phase with a fusion module to enrich the gene and disease semantic representations encoded by pre-trained language models.

  Language:Jupyter Notebook11

• ZhaohanM/FusionDTI

  FusionDTI utilises a Token-level Fusion module to effectively learn fine-grained information for Drug-Target Interaction Prediction.

  Language:Jupyter Notebook31

• IBM/materials

  Foundation Model for Materials - FM4M

  Language:Python271

• jyfang6/trace

  Language:Python154

• QizhiPei/Awesome-Biomolecule-Language-Cross-Modeling

  Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

  1417

• DeepGraphLearning/ProtST

  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts

  Language:Python837

• bowen-gao/DrugCLIP

  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

  Language:Python594

• LirongWu/awesome-protein-representation-learning

  Awesome Protein Representation Learning

  59768

• snap-stanford/GEARS

  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

  Language:Python19238

• westlake-repl/SaProt

  [ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet

  Language:Python31832

• mengzaiqiao/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1

• lucidrains/bidirectional-cross-attention

  A simple cross attention that updates both the source and target in one step

  Language:Python14012

• RElbers/info-nce-pytorch

  PyTorch implementation of the InfoNCE loss for self-supervised learning.

  Language:Python46438

• cambridgeltl/sapbert

  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

  Language:Python16935