abcyulongwang

Pinned Repositories

• Novel-X

  Novel insertion detection with 10X reads

  Language:Python8371

• ITIPs

  Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data

  Language:Perl144108

• GraffiTE

  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

  Language:R1064344

• HiTE

  High-precision TE Annotator

  Language:Python463201

• TrEMOLO

  Transposable Elements MOvement detection using LOng reads

  Language:JavaScript183215

• PopIns2

  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs

  Language:C++243134

• TEtrimmer

  TEtrimmer: a novel tool to automate manual curation of transposable elements

  Language:Python585162

• ppsPCP

  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline

  Language:Perl261614

abcyulongwang's Repositories