Assembling ONT data only using metaviral option
Jokendo-collab opened this issue · 1 comments
Jokendo-collab commented
Description of bug
I only have the ONT data from the metaviral project. When I pass this ONT data to spades in fails and asking me to provide -R1 and -R2 illumina reads. How can I go around this since I do not have these short reads?
spades.log
N/A
params.txt
N/A
SPAdes version
Spades version 3.15.5
Operating System
Linux server
Python Version
No response
Method of SPAdes installation
module
No errors reported in spades.log
- Yes
asl commented
Hello
Per SPAdes manual (https://cab.spbu.ru/files/release3.15.5/manual.html#sec3.1):
To run SPAdes 3.15.5 you need at least one library of the following types:
- Illumina paired-end/high-quality mate-pairs/unpaired reads
- IonTorrent paired-end/high-quality mate-pairs/unpaired reads
- PacBio CCS reads
SPAdes cannot be used with ONT data alone