finished abnormally, OS return value: -7 - error message only appears for larger input files
neolycus23 opened this issue · 0 comments
neolycus23 commented
Description of bug
I am trying to assemble some insect genomes. I have tried with smaller files (0.3 Gb) and it always works fine, however, every time I try to use Spades with larger files (>5Gb) I keep receiving the same message from below. I read from other posts in the issue section that this could be related to low RAM, and I have already increased it to 500 GB of RAM, but I keep getting the same errors.
== Error == system call for: "['/dmz/home/vferreira/.conda/envs/phyluce-1.7.3/bin/spades-core', '/dmz/home/vferreira/cautires/rnaspades_assemblies/SRR8739605_Cauti_DSW36952_HJLKJALXX/K49/configs/config.info', '/dmz/home/vferreira/cautires/rnaspades_assemblies/SRR8739605_Cauti_DSW36952_HJLKJALXX/K49/configs/mda_mode.info', '/dmz/home/vferreira/cautires/rnaspades_assemblies/SRR8739605_Cauti_DSW36952_HJLKJALXX/K49/configs/rna_mode.info']" finished abnormally, OS return value: -7
None
spades.log
rnaspades.SRR8739605_Cauti_DSW36952_HJLKJALXX.log
params.txt
SPAdes version
SPAdes version: 3.15.4
Operating System
OS: Linux-3.10.0-693.11.6.el7.x86_64-x86_64-with-centos-7.4.1708-Core
Python Version
Python version: 3.7.4
Method of SPAdes installation
conda
No errors reported in spades.log
- Yes