finished abnormally, err code: -6
davidjstudholme opened this issue · 1 comments
davidjstudholme commented
Description of bug
SPAdes exists with error message:
== Error == system call for: "['/usr/lib/spades/bin/spades-corrector-core', '/data/djs217/PROJECTS/17_mahmut_bacteria/03_spades/Pseudo.spades/mismatch_corrector/contigs/configs/corrector.info', '/data/djs217/PROJECTS/17_mahmut_bacteria/03_spades/Pseudo.spades/misc/assembled_contigs.fasta']" finished abnormally, err code: -6
spades.log
params.txt
SPAdes version
SPAdes version: 3.13.1
Operating System
OS: Linux-5.15.0-101-generic-x86_64-with-glibc2.35
Python Version
Python version: 3.10.12
Method of SPAdes installation
apt-get
No errors reported in spades.log
- Yes
davidjstudholme commented
This issue is resolved. It is NOT an issue with SPAdes. Rather, this behaviour was caused by the filesystem being full and therefore SPAdes was unable to write to a file.