No error code metaspades just terminate after 13 hours of running kmer counting
stopguessingwho1am opened this issue · 3 comments
stopguessingwho1am commented
Description of bug
My HPC job is set to run for 3 + days, I sent 3 jobs all of them terminate at 13 hours mark idk what is wrong
spades.log
params.txt
SPAdes version
Spades 4.0
Operating System
linux hpc
Python Version
No response
Method of SPAdes installation
manual
No errors reported in spades.log
- Yes
asl commented
SPAdes 3.13.0 you are using is ancient. Please try the latest SPAdes 4.0
stopguessingwho1am commented
SPAdes 3.13.0 you are using is ancient. Please try the latest SPAdes 4.0
May I ask how to update to spades 4.0 on hpc ;-; Conda doesnt work :( and I also tried to drag the downloaded packet to my hpc but it cannot activate
asl commented
May I ask how to update to spades 4.0 on hpc ;-; Conda doesnt work :( and I also tried to drag the downloaded packet to my hpc but it cannot activate
You may want to ask your system administrator for this. Conda definitely contains 4.0