abuchin

All-active-Manuscript

Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types

All-active-Workflow-v1

Creating the code base for All-active Model generation written on top of Bluepyopt

Ca-spike-extraction-and-SVM-decoder

ML spike algorithm and SVM decoder predicting the drifting gratings direction based on optical recordings in V1 visual cortex.

EI-with-adaptation

This code simulates the E-I population model in XPPAUT.

human-epilepsy-project

human_neuron_Ih

This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)

jazz_lstm

LSTM for Jazz

ML_protein_ligand_prediction

Mouse-all-active-models-EAP

human_neuron_Ih

This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)

abuchin/jazz_lstm

LSTM for Jazz

abuchin/human_neuron_Ih

This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)

abuchin/KCC2-in-Subiculum

Single neuron and neural network model of Subiculum circuit with dynamic potassium and chloride concentrations.

abuchin/AllenSDK

abuchin/benchmark

Comparison of single-cell normalization methods using multiple datasets with ground-truth labels

abuchin/bmtk

Brain Modeling Toolkit

abuchin/Code_snippets

A repo with random short code snippets

abuchin/cvx-nb

IPython Notebooks of Convex Optimization Problems

abuchin/Data-Science--Cheat-Sheet

Cheat Sheets

abuchin/Dcluster

Clustering by fast search and find of density peaks

abuchin/deepjazz

Deep learning driven jazz generation using Keras & Theano!

abuchin/emojify_lstm

LSTM emojify

abuchin/handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

abuchin/HSNE-clustering

Scalable analysis of large high-dimensional data

abuchin/ihmehimmeli

abuchin/imbalanced-learn

A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

abuchin/iterativeWGCNA

Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.

abuchin/jupyter_themes

A plugin to select syntax highlighting on Jupyter

abuchin/LineagePulse

Differential expression analysis for single-cell RNA-seq data

abuchin/local-linear-segmentation

This repository contains the main scripts for local linear segmentation and subsequent analysis of the resulting model space

abuchin/lstm_translation

LSTM date translation with attention mechanism

abuchin/nbdime

Tools for diffing and merging of Jupyter notebooks.

abuchin/NeuroMorphoVis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

abuchin/paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

abuchin/RTNeuron

Interactive visualization framework for geometrically detailed neuron simulations

abuchin/scAlign

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

abuchin/sphinx-gallery

Sphinx extension for automatic generation of an example gallery

abuchin/statsmodels

Statsmodels: statistical modeling and econometrics in Python

abuchin/torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

abuchin/uncertainpy

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis.