abuchin
Genetics, Neuroscience, Single cell omics, Neural networks, Cell biophysics, Machine learning
@synthesizebio Seattle
Pinned Repositories
All-active-Manuscript
Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types
All-active-Workflow-v1
Creating the code base for All-active Model generation written on top of Bluepyopt
Ca-spike-extraction-and-SVM-decoder
ML spike algorithm and SVM decoder predicting the drifting gratings direction based on optical recordings in V1 visual cortex.
EI-with-adaptation
This code simulates the E-I population model in XPPAUT.
human-epilepsy-project
human_neuron_Ih
This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)
jazz_lstm
LSTM for Jazz
ML_protein_ligand_prediction
Mouse-all-active-models-EAP
human_neuron_Ih
This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)
abuchin's Repositories
abuchin/Hydra_FitzHugh_net
abuchin/atlasplot
Reproducible Plots for the Allen Institutes Brain Atlases
abuchin/biovis
biovis simulator visualization toolbox
abuchin/BluePyOpt
Blue Brain Python Optimisation Library
abuchin/btmorph_v2
btmorph v2. Object-oriented library to analyze neuronal structure
abuchin/cvx-nb
IPython Notebooks of Convex Optimization Problems
abuchin/eFEL
Electrophys Feature Extraction Library
abuchin/gitwatch
Watch a file or folder and automatically commit changes to a git repo easily.
abuchin/Hydra_adex_LIFrealistic_net
abuchin/Hydra_Dissociated_Cells
abuchin/Hydra_Enet_popping
abuchin/Hydra_exponential_decay_net
abuchin/Hydra_HH_net
abuchin/Hydra_LIF_GAPnoGAP_net
abuchin/Hydra_nearest_neighbour
abuchin/Hydra_rate_popping
abuchin/jupyter_themes
A plugin to select syntax highlighting on Jupyter
abuchin/mat2nwb
Conversion of Svoboda lab MATLAB files to NWB format.
abuchin/models
Models built with TensorFlow
abuchin/NetControl-master
Net-contrlol-Realistic connectivity
abuchin/neuromac
Neuronal Morphologies & Circuits
abuchin/NEURON-UI
NEURON User Interface
abuchin/neuroSummerSchools
List of summer schools in neuroscience and related fields
abuchin/pynwb
abuchin/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
abuchin/PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
abuchin/SharkViewer
web-based 3D swc neuron viewer
abuchin/SimulationTutorials
Public tutorials around electrophysiological simulations
abuchin/sphinx-gallery
Sphinx extension for automatic generation of an example gallery
abuchin/uncertainpy
Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis.